RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	MID1	O15344	667 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RRP8	O43159	456 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MSI1	O43347	362 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	LAT	O43561	262 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RNASEH2A	O75792	299 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MOCS3	O95396	460 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PAEP	P09466	180 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	EPB41	P11171	864 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	GOT1	P17174	413 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CKMT2	P17540	419 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TBXAS1	P24557	533 aa	Predicted RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SLC8A1	P32418	973 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	NUDT1	P36639	197 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CSK	P41240	450 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RPL34	P49207	117 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ACADVL	P49748	655 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SGSH	P51688	502 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TBX4	P57082	545 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	IL9R	Q01113	521 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	OVGP1	Q12889	678 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CUL2	Q13617	745 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SLC12A1	Q13621	1099 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SHB	Q15464	509 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CST6	Q15828	149 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SLC45A4	Q5BKX6	768 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SFMBT2	Q5VUG0	894 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	NADSYN1	Q6IA69	706 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PMF1	Q6P1K2	205 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	NCEH1	Q6PIU2	408 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	KRBA2	Q6ZNG9	492 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	BEND5	Q7L4P6	421 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PRPF39	Q86UA1	669 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	IQCH	Q86VS3	1027 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	GATAD2A	Q86YP4	633 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MMAA	Q8IVH4	418 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MFN1	Q8IWA4	741 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CCDC117	Q8IWD4	279 aa	Predicted RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	DHX40	Q8IX18	779 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	EID2	Q8N6I1	236 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	HJURP	Q8NCD3	748 aa	Predicted RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	UBA3	Q8TBC4	463 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	GANC	Q8TET4	914 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RFFL	Q8WZ73	363 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	FGF11	Q92914	225 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MIB2	Q96AX9	1013 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	EEF2KMT	Q96G04	330 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	VPS50	Q96JG6	964 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SERAC1	Q96JX3	654 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CNDP2	Q96KP4	475 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	HSFY1	Q96LI6	401 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	OMD	Q99983	421 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PRORY	Q9H606	182 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	EBF2	Q9HAK2	575 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	GDF3	Q9NR23	364 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MDFIC	Q9P1T7	246 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SLCO3A1	Q9UIG8	710 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	INTS6	Q9UL03	887 aa	Known RBP	4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ERVW-1	Q9UQF0	538 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	KALRN	O60229	2985 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	KIF26B	Q2KJY2	2108 aa		4.03	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MYO18B	Q8IUG5	2567 aa		4.03	□□□□□ -1.77
SNRNP40-205	ENST00000486941	LOC400499	M0QZD8	3231 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	AHCTF1	Q8WYP5	2266 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	UNC13C	Q8NB66	2214 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	DOCK4	Q8N1I0	1966 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	MGA	Q8IWI9	3026 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3D	A0A087WVF3	549 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3I	A0A087WXS9	549 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3E	A0A087X179	549 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3K	A0A087X1G2	549 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TTC34	A8MYJ7	566 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3L	B9A6J9	549 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	CAPN9	O14815	690 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	SLC7A4	O43246	635 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	MAGEC1	O60732	1142 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	SNX2	O60749	519 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	LUC7L3	O95232	432 aa	Known RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	MT-ND5	P03915	603 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	FYN	P06241	537 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	CENPB	P07199	599 aa	Predicted RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	HSP90AA1	P07900	732 aa	Known RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	TBC1D3H	P0C7X1	549 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	ACP1	P24666	158 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	EPHA8	P29322	1005 aa	Predicted RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	ACTN2	P35609	894 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	NNMT	P40261	264 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	CARS	P49589	748 aa	Known RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	VPS41	P49754	854 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	RGS7	P49802	495 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	NDUFA8	P51970	172 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	PLK1	P53350	603 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	ADPRH	P54922	357 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	RPS24	P62847	133 aa	Known RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	FKBP3	Q00688	224 aa	Known RBP	4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	ECT2L	Q008S8	904 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	SEMG2	Q02383	582 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	SULT2A1	Q06520	285 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	DNAJC3	Q13217	504 aa		4.02	□□□□□ -1.77
SNRNP40-205	ENST00000486941	CDH18	Q13634	790 aa		4.02	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms