RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SLC25A47Q6Q0C1 308 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 FIP1L1Q6UN15 594 aaKnown RBP2.7□□□□□ -1.98
VPS50-216ENST00000484954 TMPRSS11BQ86T26 416 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 LINC00346Q8IVM7 164 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 ZNF595Q8IYB9 648 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 Q8N377 158 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 AFAP1Q8N556 730 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 PPFIBP2Q8ND30 876 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 PRSS33Q8NF86 280 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 OR52N5Q8NH56 324 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 ZNF519Q8TB69 540 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 FAM120BQ96EK7 910 aaKnown RBP2.7□□□□□ -1.98
VPS50-216ENST00000484954 C10orf90Q96M02 699 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 NECTIN4Q96NY8 510 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 URM1Q9BTM9 101 aaKnown RBP2.7□□□□□ -1.98
VPS50-216ENST00000484954 LRRC61Q9BV99 259 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 THAP2Q9H0W7 228 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 SPHK2Q9NRA0 654 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 NUDT4Q9NZJ9 180 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 THEGQ9P2T0 379 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 WBP11Q9Y2W2 641 aaKnown RBP2.7□□□□□ -1.98
VPS50-216ENST00000484954 GRIP1Q9Y3R0 1128 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 ZNF318Q5VUA4 2279 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 ABCA7Q8IZY2 2146 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 LOC102723996A0A087X1L8 192 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 C15orf61A6NNL5 157 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 OR2T7P0C7T2 308 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 DARSP14868 501 aaKnown RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 RBMS1P29558 406 aaKnown RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 GCH1P30793 250 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 CDH13P55290 713 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 MAZP56270 477 aaKnown RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 SLC8A3P57103 927 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 HNRNPKP61978 463 aaKnown RBP eCLIP2.69□□□□□ -1.98
VPS50-216ENST00000484954 LMOD3Q0VAK6 560 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 NFATC2Q13469 925 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 CA9Q16790 459 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 ELFN2Q5R3F8 820 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 RNASEH2BQ5TBB1 312 aaKnown RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 KRT79Q5XKE5 535 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 DHRS7BQ6IAN0 325 aaPredicted RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 C17orf53Q8N3J3 647 aaPredicted RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 C1orf131Q8NDD1 294 aaKnown RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 PTPMT1Q8WUK0 201 aaPredicted RBP2.69□□□□□ -1.98
VPS50-216ENST00000484954 ARHGAP45Q92619 1136 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 SLCO2A1Q92959 643 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 USP28Q96RU2 1077 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 KRT12Q99456 494 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 RAD9AQ99638 391 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 CPVLQ9H3G5 476 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 MAN2C1Q9NTJ4 1040 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 GRID1Q9ULK0 1009 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.69□□□□□ -1.98
VPS50-216ENST00000484954 TNNQ9UQP3 1299 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 MOB4Q9Y3A3 225 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 ADAMTS9Q9P2N4 1935 aa2.69□□□□□ -1.98
VPS50-216ENST00000484954 A6NCN8 305 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 ENO4A6NNW6 628 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 AVILO75366 819 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 TRIM49P0CI25 452 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 TRIM49CP0CI26 452 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 CDH3P22223 829 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 PAX3P23760 479 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 MPZP25189 248 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 HOXD13P35453 343 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 MNDAP41218 407 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 RPL21P46778 160 aaKnown RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 RXRGP48443 463 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 NRIP1P48552 1158 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 LBX1P52954 281 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 GSCP56915 257 aaPredicted RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 MAT1AQ00266 395 aaKnown RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 CALCOCO2Q13137 446 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 MTF1Q14872 753 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 PCLAFQ15004 111 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 TNIP1Q15025 636 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 PLEKHS1Q5SXH7 462 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 C20orf194Q5TEA3 1177 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 SH2D6Q7Z4S9 175 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 TMEM173Q86WV6 379 aaPredicted RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 NIPA2Q8N8Q9 360 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 POC5Q8NA72 575 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 Q8NBF4 154 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 OR10G8Q8NGN5 311 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 OR1L3Q8NH93 324 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 C11orf45Q8TAV5 145 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 GTF3AQ92664 365 aaKnown RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 DHX58Q96C10 678 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 FOXN4Q96NZ1 517 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 BARD1Q99728 777 aaKnown RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 GPATCH1Q9BRR8 931 aaKnown RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 KIFC3Q9BVG8 833 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 MAK16Q9BXY0 300 aaKnown RBP2.68□□□□□ -1.98
VPS50-216ENST00000484954 GHITMQ9H3K2 345 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 SYNCQ9H7C4 482 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 ZNF69Q9UC07 566 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 STUB1Q9UNE7 303 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 CROCCQ5TZA2 2017 aa2.68□□□□□ -1.98
VPS50-216ENST00000484954 IGHV3OR16-10A0A075B7F0 116 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms