RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TNFSF10P50591 281 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 FANCCQ00597 558 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 KIR2DS3Q14952 304 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 KAZNQ674X7 775 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 SPNS3Q6ZMD2 512 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 FAM20CQ8IXL6 584 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 KBTBD2Q8IY47 623 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CLDN19Q8N6F1 224 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CCDC110Q8TBZ0 833 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 HAS2Q92819 552 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 ZNF160Q9HCG1 818 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CUTCQ9NTM9 273 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 IL1RAPL1Q9NZN1 696 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CTSFQ9UBX1 484 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 SEC14L3Q9UDX4 400 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 SH3BGRL2Q9UJC5 107 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 KLHL20Q9Y2M5 609 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 VSTM2BA6NLU5 285 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 LIN7AO14910 233 aaPredicted RBP16.45■□□□□ 0.22
VIM-204ENST00000478746 USP1O94782 785 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 MBD3O95983 291 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 TMEM253P0C7T8 217 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 MAGP20916 626 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 ACADLP28330 430 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 PBX1P40424 430 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 CDKN2BP42772 138 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 OR1D4P47884 311 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 CARSP49589 748 aaKnown RBP16.45■□□□□ 0.22
VIM-204ENST00000478746 RBPJQ06330 500 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 BRD3Q15059 726 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 YOD1Q5VVQ6 348 aaPredicted RBP16.45■□□□□ 0.22
VIM-204ENST00000478746 TAS2R42Q7RTR8 314 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 SERPINA9Q86WD7 417 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 OR5K2Q8NHB8 316 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 DNAJB8Q8NHS0 232 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 APOL2Q9BQE5 337 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 CRB3Q9BUF7 120 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 PTGFRNQ9P2B2 879 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 PLAGL1Q9UM63 463 aa16.45■□□□□ 0.22
VIM-204ENST00000478746 CCL22O00626 93 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 MAP2K7O14733 419 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 KCNN4O15554 427 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 PRICKLE3O43900 615 aaPredicted RBP16.44■□□□□ 0.22
VIM-204ENST00000478746 KDM1AO60341 852 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 AP2A1O95782 977 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 CRYABP02511 175 aaKnown RBP16.44■□□□□ 0.22
VIM-204ENST00000478746 ACPPP15309 386 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 ACRV1P26436 265 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 MST1P26927 711 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 PEBP1P30086 187 aaKnown RBP16.44■□□□□ 0.22
VIM-204ENST00000478746 MC4RP32245 332 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 ADRA1AP35348 466 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 ZNF140P52738 457 aaPredicted RBP16.44■□□□□ 0.22
VIM-204ENST00000478746 CASP6P55212 293 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 OLIG2Q13516 323 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 GRM7Q14831 915 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 SLC18A3Q16572 532 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 IQCDQ96DY2 449 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 C19orf43Q9BQ61 176 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 MESP1Q9BRJ9 268 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.44■□□□□ 0.22
VIM-204ENST00000478746 ABI3Q9P2A4 366 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 MAU2Q9Y6X3 613 aa16.44■□□□□ 0.22
VIM-204ENST00000478746 TRBV5-4A0A0C4DH59 114 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 HACD1B0YJ81 288 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 AP2A2O94973 939 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 RASAL1O95294 804 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 MCM3P25205 808 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 GRIA3P42263 894 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 SMSP52788 366 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 KRTAP10-9P60411 292 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 OCA2Q04671 838 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 SRSF11Q05519 484 aaKnown RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 KLC1Q07866 573 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 MSLNQ13421 630 aaPredicted RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 TAZQ16635 292 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 FAM214AQ32MH5 1076 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 ZC3H12BQ5HYM0 836 aaKnown RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 TCTE1Q5JU00 501 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 METTL27Q8N6F8 245 aaPredicted RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 TTC29Q8NA56 475 aaPredicted RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 PSMF1Q92530 271 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 ELMO1Q92556 727 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 C8orf44Q96CB5 159 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 HAUS1Q96CS2 278 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 GBA3Q9H227 469 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 SMARCAL1Q9NZC9 954 aa16.43■□□□□ 0.22
VIM-204ENST00000478746 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 AAR2Q9Y312 384 aaKnown RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 MRPS2Q9Y399 296 aaKnown RBP16.43■□□□□ 0.22
VIM-204ENST00000478746 NSG1A0A0A6YYJ2 146 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 F10P00742 488 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 UQCRHP07919 91 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 PRR35P0CG20 571 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 PRSS56P0CW18 603 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 MYBL2P10244 700 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 ESRRAP11474 423 aaPredicted RBP16.42■□□□□ 0.22
VIM-204ENST00000478746 AGAP20933 346 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 SOX11P35716 441 aa16.42■□□□□ 0.22
VIM-204ENST00000478746 NSG1P42857 185 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms