RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 NELFEP18615 380 aaKnown RBP16.06■□□□□ 0.16
TMEM53-208ENST00000476724 AOAHP28039 575 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 POLR2LP62875 67 aaKnown RBP16.06■□□□□ 0.16
TMEM53-208ENST00000476724 HMGCS1Q01581 520 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 CYP4F3Q08477 520 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 GBX1Q14549 363 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 ATP13A5Q4VNC0 1218 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 USP39Q53GS9 565 aaKnown RBP16.06■□□□□ 0.16
TMEM53-208ENST00000476724 CYBRD1Q53TN4 286 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 CARD16Q5EG05 197 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 LRRC3BQ96PB8 259 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 THUMPD3Q9BV44 507 aaKnown RBP16.06■□□□□ 0.16
TMEM53-208ENST00000476724 ACTR8Q9H981 624 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 FARSBQ9NSD9 589 aaKnown RBP16.06■□□□□ 0.16
TMEM53-208ENST00000476724 SNX6Q9UNH7 406 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 PDE10AQ9Y233 779 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 NEUROG3Q9Y4Z2 214 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 PLXNB3Q9ULL4 1909 aa16.06■□□□□ 0.16
TMEM53-208ENST00000476724 PABPN1LA6NDY0 278 aaKnown RBP16.05■□□□□ 0.16
TMEM53-208ENST00000476724 DFNA5O60443 496 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 ERN1O75460 977 aaKnown RBP16.05■□□□□ 0.16
TMEM53-208ENST00000476724 SCELO95171 688 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 ASLP04424 464 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 PRPS2P11908 318 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 PRPH2P23942 346 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 NFKBIAP25963 317 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 CCR7P32248 378 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 SOX11P35716 441 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 STK19P49842 368 aaPredicted RBP16.05■□□□□ 0.16
TMEM53-208ENST00000476724 SP140Q13342 867 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 DUSP6Q16828 381 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 RUNDC3AQ59EK9 446 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 USP51Q70EK9 711 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 UBE2R2Q712K3 238 aaPredicted RBP16.05■□□□□ 0.16
TMEM53-208ENST00000476724 BBS2Q9BXC9 721 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 ZFP14Q9HCL3 533 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.05■□□□□ 0.16
TMEM53-208ENST00000476724 MYO9BQ13459 2157 aa16.05■□□□□ 0.16
TMEM53-208ENST00000476724 NPIPB8E9PQR5 432 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 TRMUO75648 421 aaKnown RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 TTKP33981 857 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 CLDN8P56748 225 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ADARB1P78563 741 aaKnown RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 B4GALNT1Q00973 533 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SPANXN4Q5MJ08 99 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 LY6G5CQ5SRR4 150 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 PLEKHS1Q5SXH7 462 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 PPP2R2DQ66LE6 453 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ATG9BQ674R7 924 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ZNF557Q8N988 423 aaPredicted RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ST13P5Q8NFI4 369 aaPredicted RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 IRF7Q92985 503 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 RDH12Q96NR8 316 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 OR52E6Q96RD3 313 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 BRD9Q9H8M2 597 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 NTN4Q9HB63 628 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 TIMMDC1Q9NPL8 285 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SPHK2Q9NRA0 654 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 PKD2L2Q9NZM6 624 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ELOVL7A1L3X0 281 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SERTM1A2A2V5 107 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ZNF701M0R085 212 aaPredicted RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ZNF197O14709 1029 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ALBP02768 609 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 BCKDHAP12694 445 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 MAPK1P28482 360 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SPINT3P49223 89 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ALDH3A2P51648 485 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 RPS14P62263 151 aaKnown RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 AAK1Q2M2I8 961 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ZBED5Q49AG3 693 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SGO1Q5FBB7 561 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 GPR141Q7Z602 305 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ERI1Q8IV48 349 aaKnown RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 PLPP6Q8IY26 295 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ZNF548Q8NEK5 533 aaPredicted RBP16.04■□□□□ 0.16
TMEM53-208ENST00000476724 OR10A6Q8NH74 314 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SELENOMQ8WWX9 145 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 ASB11Q8WXH4 323 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 RSPRY1Q96DX4 576 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 KCNH6Q9H252 994 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 RMND5AQ9H871 391 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 DPP7Q9UHL4 492 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 TMED5Q9Y3A6 229 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 CROCCQ5TZA2 2017 aa16.04■□□□□ 0.16
TMEM53-208ENST00000476724 SOBPA7XYQ1 873 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 HPRP00739 348 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 POU2F2P09086 479 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 ATP1B2P14415 290 aaPredicted RBP16.03■□□□□ 0.16
TMEM53-208ENST00000476724 TYRP14679 529 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 ACPPP15309 386 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 ZNF30P17039 623 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 LHCGRP22888 699 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 SLC5A2P31639 672 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 ARSFP54793 590 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 AP1S2P56377 157 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 KCNC3Q14003 757 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 CPSF6Q16630 551 aaKnown RBP eCLIP16.03■□□□□ 0.16
TMEM53-208ENST00000476724 SUSD1Q6UWL2 747 aa16.03■□□□□ 0.16
TMEM53-208ENST00000476724 NEK10Q6ZWH5 1172 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms