RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 RCVRNP35243 200 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ERVFC1P60507 584 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CHIT1Q13231 466 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IRF5Q13568 498 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CHRNA6Q15825 494 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 NFE2Q16621 373 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 C6orf136Q5SQH8 315 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 OGFRL1Q5TC84 451 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ADNP2Q6IQ32 1131 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 HMBOX1Q6NT76 420 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 Q6ZVU0 165 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SPATC1Q76KD6 591 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ZNF554Q86TJ5 538 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 FAM124AQ86V42 546 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ZDHHC21Q8IVQ6 265 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SLC34A3Q8N130 599 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 DTWD1Q8N5C7 304 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 OR13J1Q8NGT2 312 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PLEKHA8Q96JA3 519 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 VPS35Q96QK1 796 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 FAM126AQ9BYI3 521 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CEP44Q9C0F1 390 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 LHPPQ9H008 270 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 REEP1Q9H902 201 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 LRTM1Q9HBL6 345 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 NKIRAS2Q9NYR9 191 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CFAP97Q9P2B7 532 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SLC13A4Q9UKG4 626 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SPTAN1Q13813 2472 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IQCMA0A1B0GVH7 501 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 ELOVL7A1L3X0 281 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 HAS3O00219 553 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PRMT5O14744 637 aaPredicted RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 EIF2S1P05198 315 aaKnown RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CHRM1P11229 460 aaPredicted RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SHMT2P34897 504 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CTSKP43235 329 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 COPZ1P61923 177 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 ADAM17P78536 824 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 TRAF3Q13114 568 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PAFAH1B3Q15102 231 aaKnown RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 ARMC4Q5T2S8 1044 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PPP2R2DQ66LE6 453 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SMARCD3Q6STE5 483 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SERPINA13PQ6UXR4 307 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SLC24A5Q71RS6 500 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 EFL1Q7Z2Z2 1120 aaKnown RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 DSG4Q86SJ6 1040 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SLC22A16Q86VW1 577 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 FUNDC1Q8IVP5 155 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 ARHGAP12Q8IWW6 846 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 ZBTB8BQ8NAP8 495 aaPredicted RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 NDNFQ8TB73 568 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SLC13A3Q8WWT9 602 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 IL17FQ96PD4 163 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 FCRL5Q96RD9 977 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 NODALQ96S42 347 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PLGRKTQ9HBL7 147 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 HECAQ9UBI9 543 aaPredicted RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SLCO3A1Q9UIG8 710 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 GTF2A1LQ9UNN4 478 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SLC8A2Q9UPR5 921 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PDE10AQ9Y233 779 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 HCFC2Q9Y5Z7 792 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CPQQ9Y646 472 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CHD8Q9HCK8 2581 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SCN2AQ99250 2005 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PLXNB2O15031 1838 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 KPNA4O00629 521 aaPredicted RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 OR10H3O60404 316 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PCDH8O95206 1070 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 NDST3O95803 873 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 NUDT7P0C024 238 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CCDC159P0C7I6 412 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 SMIM18P0DKX4 95 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 C8orf89P0DMQ9 161 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 HLA-EP13747 358 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CD1DP15813 335 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 TCF3P15923 654 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 TACR1P25103 407 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 AXLP30530 894 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 MAT2AP31153 395 aaKnown RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 CAPGP40121 348 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 BDKRB1P46663 353 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PLA2G16P53816 162 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 ERVPABLB-1P60509 514 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 WDR5P61964 334 aaKnown RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 MLLT1Q03111 559 aaPredicted RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 TNK2Q07912 1038 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 PYCR3Q53H96 274 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 HECTD3Q5T447 861 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 METTL21CQ5VZV1 264 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 B3GLCTQ6Y288 498 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 THAP5Q7Z6K1 395 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 DEPDC4Q8N2C3 294 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 FLCNQ8NFG4 579 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 TNIP2Q8NFZ5 429 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 XAGE5Q8WWM1 108 aa4.87□□□□□ -1.63
CCDC39-204ENST00000476379 EXOSC8Q96B26 276 aaKnown RBP4.87□□□□□ -1.63
CCDC39-204ENST00000476379 DTNBP1Q96EV8 351 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms