RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	RUVBL2	Q9Y230	463 aa	Known RBP	11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	NFS1	Q9Y697	457 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	MYO18B	Q8IUG5	2567 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	COL6A6	A6NMZ7	2263 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	C21orf140	B9A014	251 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	CCDC188	H7C350	402 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	NDC80	O14777	642 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	RASGRF2	O14827	1237 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	VPS26A	O75436	327 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	OR2B3	O76000	313 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SLCO2B1	O94956	709 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	S1PR4	O95977	384 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	CAT	P04040	527 aa	Known RBP	11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	CD9	P21926	228 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	ARNT	P27540	789 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	PKLR	P30613	574 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SLC1A2	P43004	574 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	DHX9	Q08211	1270 aa	Known RBP	11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SLC5A12	Q1EHB4	618 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	HSP90AA5P	Q58FG0	334 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	UGT3A1	Q6NUS8	523 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	FAM199X	Q6PEV8	388 aa	Predicted RBP	11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	PALM2	Q8IXS6	379 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	LMNTD2	Q8IXW0	634 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	OR1L3	Q8NH93	324 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SEC14L1	Q92503	715 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	LPGAT1	Q92604	370 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	OR2A14	Q96R47	310 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	ACTL8	Q9H568	366 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	FAM114A2	Q9NRY5	505 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SPHK1	Q9NYA1	384 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	NDOR1	Q9UHB4	597 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	PCYOX1	Q9UHG3	505 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SNX7	Q9UNH6	387 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	POLH	Q9Y253	713 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	MAN2B2	Q9Y2E5	1009 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	SEC16A	O15027	2179 aa		11.13	□□□□□ -0.63
CPNE1-222	ENST00000473373	FER1L5	A0AVI2	2057 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	EFCAB8	A8MWE9	144 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	TTI1	O43156	1089 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZNF749	O43361	778 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	BANF1	O75531	89 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CREG1	O75629	220 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	C1orf105	O95561	183 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	TTC4	O95801	387 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	F7	P08709	466 aa	Predicted RBP	11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	MAG	P20916	626 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	OAS2	P29728	719 aa	Known RBP	11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	POLE2	P56282	527 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	ARL4C	P56559	192 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CUL1	Q13616	776 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CRYM	Q14894	314 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	MORF4L2	Q15014	288 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	KYNU	Q16719	465 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	KLHL38	Q2WGJ6	581 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	SPANXN3	Q5MJ09	141 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	ATP1A1-AS1	Q5TC04	95 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	THEMIS2	Q5TEJ8	643 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	PRAMEF17	Q5VTA0	474 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	PAPD7	Q5XG87	772 aa	Known RBP	11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CDHR3	Q6ZTQ4	885 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CENPU	Q71F23	418 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	FAM20C	Q8IXL6	584 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	OR2L8	Q8NGY9	312 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	APOBEC4	Q8WW27	367 aa	Known RBP	11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	SNF8	Q96H20	258 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	BIRC8	Q96P09	236 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	KRT12	Q99456	494 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	TRIM51	Q9BSJ1	452 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	NAT9	Q9BTE0	207 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	NDC1	Q9BTX1	674 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	PITPNM3	Q9BZ71	974 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	SPRY4	Q9C004	299 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	TRIM4	Q9C037	500 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	RNF14	Q9UBS8	474 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	TRMT6	Q9UJA5	497 aa	Known RBP	11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	FBXO5	Q9UKT4	447 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CHMP2B	Q9UQN3	213 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	CDYL	Q9Y232	598 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	PADI2	Q9Y2J8	665 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	COMMD10	Q9Y6G5	202 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	FAM169A	Q9Y6X4	670 aa		11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	TNRC6A	Q8NDV7	1962 aa	Known RBP	11.12	□□□□□ -0.63
CPNE1-222	ENST00000473373	HECTD1	Q9ULT8	2610 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZNF839	A8K0R7	811 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	SMAP	O00193	183 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	MEN1	O00255	615 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ERVK-10	P10266	1014 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ALAS2	P22557	587 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	F8A1	P23610	371 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	CMPK1	P30085	196 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	RPA3	P35244	121 aa	Predicted RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	RGS4	P49798	205 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ITGA8	P53708	1063 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ADAR	P55265	1226 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	RPS18	P62269	152 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	MPP1	Q00013	466 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	CALCOCO2	Q13137	446 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms