RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SLC22A18Q96BI1 424 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 CARD6Q9BX69 1037 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 SLC29A3Q9BZD2 475 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 TSGA10Q9BZW7 698 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 CATSPERZQ9NTU4 200 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 EURLQ9NYK6 297 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 PAK5Q9P286 719 aa19.02■□□□□ 0.64
COL9A3-210ENST00000472880 FER1L5A0AVI2 2057 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 ALPPP05187 535 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 ETS1P14921 441 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 VARSP26640 1264 aaKnown RBP19.01■□□□□ 0.63
COL9A3-210ENST00000472880 DCAF10Q5QP82 559 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 PRUNE1Q86TP1 453 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 TAX1BP1Q86VP1 789 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 FAM20CQ8IXL6 584 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 RBMXL3Q8N7X1 1067 aaKnown RBP19.01■□□□□ 0.63
COL9A3-210ENST00000472880 Q8NA96 180 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 GSDMBQ8TAX9 411 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 INTS7Q9NVH2 962 aaKnown RBP19.01■□□□□ 0.63
COL9A3-210ENST00000472880 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.01■□□□□ 0.63
COL9A3-210ENST00000472880 C5AR2Q9P296 337 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 CIDEBQ9UHD4 219 aa19.01■□□□□ 0.63
COL9A3-210ENST00000472880 IQCF5A8MTL0 148 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 PRMT5O14744 637 aaPredicted RBP19■□□□□ 0.63
COL9A3-210ENST00000472880 KLHL41O60662 606 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 GPC4O75487 556 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 S1PR4O95977 384 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 CD9P21926 228 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 TTPAP49638 278 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 CYP2A13Q16696 494 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 PTRHD1Q6GMV3 140 aaKnown RBP19■□□□□ 0.63
COL9A3-210ENST00000472880 LDB1Q86U70 411 aaPredicted RBP19■□□□□ 0.63
COL9A3-210ENST00000472880 KRT222Q8N1A0 295 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 C2orf73Q8N5S3 287 aaPredicted RBP19■□□□□ 0.63
COL9A3-210ENST00000472880 LINC01555Q8NAE3 123 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 PTERQ96BW5 349 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 IL17FQ96PD4 163 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 RAB11FIP5Q9BXF6 653 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 P4HTMQ9NXG6 502 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 SLC39A10Q9ULF5 831 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 GUCA1BQ9UMX6 200 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 KLHL20Q9Y2M5 609 aa19■□□□□ 0.63
COL9A3-210ENST00000472880 GOLGA6L6A8MZA4 724 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 KRT86O43790 486 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 ALAS2P22557 587 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 AOAHP28039 575 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 ARSFP54793 590 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 MYBPC3Q14896 1274 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 MRPL14Q6P1L8 145 aaKnown RBP18.99■□□□□ 0.63
COL9A3-210ENST00000472880 TTC23LQ6PF05 361 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 MCATQ8IVS2 390 aaKnown RBP18.99■□□□□ 0.63
COL9A3-210ENST00000472880 GALNT16Q8N428 558 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 OR2L8Q8NGY9 312 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 DENND1AQ8TEH3 1009 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 UBE2Q2Q8WVN8 375 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 PANX3Q96QZ0 392 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 MENTQ9BUN1 341 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 CHRAC1Q9NRG0 131 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 MARCH4Q9P2E8 410 aaPredicted RBP18.99■□□□□ 0.63
COL9A3-210ENST00000472880 GNPTGQ9UJJ9 305 aa18.99■□□□□ 0.63
COL9A3-210ENST00000472880 SNRNP200O75643 2136 aaKnown RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 A0A1B0GX78 115 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 RASGRF2O14827 1237 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 CD3EAPO15446 510 aaKnown RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 CNOT3O75175 753 aaKnown RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 SLCO2B1O94956 709 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 SESN2P58004 480 aaPredicted RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 FOXL2P58012 376 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 ZC3H12BQ5HYM0 836 aaKnown RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 PCID2Q5JVF3 399 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 TTLL10Q6ZVT0 673 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 PPP1R32Q7Z5V6 425 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 IQCKQ8N0W5 287 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 RAB42Q8N4Z0 105 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 LMNTD1Q8N9Z9 388 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 SSC4DQ8WTU2 575 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 SKA2Q8WVK7 121 aaPredicted RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 TM9SF4Q92544 642 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 FKBP10Q96AY3 582 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 EIF2B3Q9NR50 452 aaKnown RBP18.98■□□□□ 0.63
COL9A3-210ENST00000472880 SHANK1Q9Y566 2161 aa18.98■□□□□ 0.63
COL9A3-210ENST00000472880 TCP11X1B4DZS4 312 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 IPO13O94829 963 aaKnown RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 UMODP07911 640 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 ZSCAN5DPP0CG00 497 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 PIM1P11309 404 aaPredicted RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 RPL22P35268 128 aaKnown RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 BASP1P80723 227 aaKnown RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 GRB7Q14451 532 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 RPS6KA1Q15418 735 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 SF1Q15637 639 aaKnown RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 MPP5Q8N3R9 675 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 OTUD6BQ8N6M0 293 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 ILKAPQ9H0C8 392 aaPredicted RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 B3GNT3Q9Y2A9 372 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 MRFAP1Q9Y605 127 aa18.97■□□□□ 0.63
COL9A3-210ENST00000472880 USP9XQ93008 2570 aaPredicted RBP18.97■□□□□ 0.63
COL9A3-210ENST00000472880 USP9YO00507 2555 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-210ENST00000472880 SEC16AO15027 2179 aa18.96■□□□□ 0.63
COL9A3-210ENST00000472880 KPNA5O15131 536 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms