RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FMO4P31512 558 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 IL10RAQ13651 578 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 RHBDD2Q6NTF9 364 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 TCTN3Q6NUS6 607 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 CILP2Q8IUL8 1156 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 OTUD6BQ8N6M0 293 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 ENDOVQ8N8Q3 282 aaKnown RBP18.68■□□□□ 0.58
USP40-207ENST00000450940 NAT8LQ8N9F0 302 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 GSDMBQ8TAX9 411 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 HMGCLL1Q8TB92 370 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 SERPINB12Q96P63 405 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 RAB11FIP5Q9BXF6 653 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 SPRTNQ9H040 489 aaPredicted RBP18.68■□□□□ 0.58
USP40-207ENST00000450940 ZNF71Q9NQZ8 489 aaPredicted RBP18.68■□□□□ 0.58
USP40-207ENST00000450940 INTS10Q9NVR2 710 aaKnown RBP18.68■□□□□ 0.58
USP40-207ENST00000450940 SAMD15Q9P1V8 674 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 ANAPC2Q9UJX6 822 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 TCFL5Q9UL49 500 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 SNX12Q9UMY4 172 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 PLCL2Q9UPR0 1127 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 VPS9D1Q9Y2B5 631 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 ANKRD12Q6UB98 2062 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 ZCWPW2A0A1B0GU75 182 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 MKRN2OSH3BPM6 223 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 WISP1O95388 367 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 CCNFP41002 786 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 TERF1P54274 439 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 PTCHD3Q3KNS1 767 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 LACTB2Q53H82 288 aaPredicted RBP18.67■□□□□ 0.58
USP40-207ENST00000450940 CASC4Q6P4E1 433 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 TLDC1Q6P9B6 456 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 TTC23LQ6PF05 361 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 PTRH1Q86Y79 214 aaKnown RBP18.67■□□□□ 0.58
USP40-207ENST00000450940 GRK7Q8WTQ7 553 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 N4BP2L2Q92802 583 aaPredicted RBP18.67■□□□□ 0.58
USP40-207ENST00000450940 SIGLEC10Q96LC7 697 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 IL17FQ96PD4 163 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 TRIM56Q9BRZ2 755 aaKnown RBP18.67■□□□□ 0.58
USP40-207ENST00000450940 TLK1Q9UKI8 766 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 CRYL1Q9Y2S2 319 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 KLK4Q9Y5K2 254 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 NFS1Q9Y697 457 aa18.67■□□□□ 0.58
USP40-207ENST00000450940 KIF5CO60282 957 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 NIPSNAP2O75323 286 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 CTSBP07858 339 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 PKMP14618 531 aaKnown RBP18.66■□□□□ 0.58
USP40-207ENST00000450940 MAGP20916 626 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 AGXTP21549 392 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 GCGRP47871 477 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 DHX34Q14147 1143 aaKnown RBP18.66■□□□□ 0.58
USP40-207ENST00000450940 NCF4Q15080 339 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 DEFB110Q30KQ9 67 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 FAM20CQ8IXL6 584 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 AGGF1Q8N302 714 aaeCLIP18.66■□□□□ 0.58
USP40-207ENST00000450940 LMNTD1Q8N9Z9 388 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 PROKR1Q8TCW9 393 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 GBP5Q96PP8 586 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 DHRS4Q9BTZ2 278 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 SLC7A5P2Q9GIP4 190 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 EURLQ9NYK6 297 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 CIDEBQ9UHD4 219 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 SLC39A10Q9ULF5 831 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 SNX7Q9UNH6 387 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 SRPK3Q9UPE1 567 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 TP53TG5Q9Y2B4 290 aa18.66■□□□□ 0.58
USP40-207ENST00000450940 ASH1LQ9NR48 2969 aaKnown RBP18.66■□□□□ 0.58
USP40-207ENST00000450940 GOLGA6L10A0A0M3HER8 536 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 K7EM74 188 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 USP1O94782 785 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 CBSLP0DN79 551 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 CBSP35520 551 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 CASRP41180 1078 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 CSRP3P50461 194 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 CCSMST1Q4G0I0 132 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 LMNTD2Q8IXW0 634 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 PPIL6Q8IXY8 311 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 C2orf73Q8N5S3 287 aaPredicted RBP18.65■□□□□ 0.58
USP40-207ENST00000450940 MAGEC3Q8TD91 643 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 DENND1AQ8TEH3 1009 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 SLCO2A1Q92959 643 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 ZUFSPQ96AP4 578 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 ZNF669Q96BR6 464 aaPredicted RBP18.65■□□□□ 0.58
USP40-207ENST00000450940 FOPNLQ96NB1 174 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 C17orf62Q9BQA9 187 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 TRIM55Q9BYV6 548 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 MLXIPLQ9NP71 852 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 INTS7Q9NVH2 962 aaKnown RBP18.65■□□□□ 0.58
USP40-207ENST00000450940 KLHL42Q9P2K6 505 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 GALPQ9UBC7 116 aa18.65■□□□□ 0.58
USP40-207ENST00000450940 TARM1B6A8C7 271 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 GOLGA8MH3BSY2 632 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 ZNF185O15231 689 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 ZSCAN9O15535 394 aaPredicted RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 KLF7O75840 302 aaPredicted RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 CHRM3P20309 590 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 BDKRB1P46663 353 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 CLCN7P51798 805 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 KCNC4Q03721 635 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 SF1Q15637 639 aaKnown RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 CYP2A13Q16696 494 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms