RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DLG3Q92796 817 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 C19orf60Q96EN9 201 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 BAG1Q99933 345 aaPredicted RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 ETNK1Q9HBU6 452 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 TSR3Q9UJK0 312 aaKnown RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 CNOT3O75175 753 aaKnown RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 IGHEP01854 428 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 RPN2P04844 631 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 TPBGLP0DKB5 382 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 VARSP26640 1264 aaKnown RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 CCR7P32248 378 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 FDFT1P37268 417 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 GRIA1P42261 906 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 RAB28P51157 221 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 SNX1Q13596 522 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 MYBPC3Q14896 1274 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 DNAJC21Q5F1R6 531 aaKnown RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 TTLL10Q6ZVT0 673 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 PPP1R32Q7Z5V6 425 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 PRUNE1Q86TP1 453 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 LDB1Q86U70 411 aaPredicted RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 VRK3Q8IV63 474 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 TMEM151BQ8IW70 566 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 DCUN1D3Q8IWE4 304 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 TXLNBQ8N3L3 684 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 DNAJC22Q8N4W6 341 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 PPHLN1Q8NEY8 458 aaKnown RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 GSDMBQ8TAX9 411 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 SKA2Q8WVK7 121 aaPredicted RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 TM9SF4Q92544 642 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 SNRNP40Q96DI7 357 aaKnown RBP13.96□□□□□ -0.17
SDC1-204ENST00000429035 MRFAP1L1Q96HT8 127 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 EURLQ9NYK6 297 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 C5AR2Q9P296 337 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 CDC23Q9UJX2 597 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 ANAPC5Q9UJX4 755 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 SLC39A10Q9ULF5 831 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 B3GNT3Q9Y2A9 372 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 CAPN6Q9Y6Q1 641 aa13.96□□□□□ -0.17
SDC1-204ENST00000429035 A0A1B0GX78 115 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 H3BMH7 237 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 APOA4P06727 396 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 UMODP07911 640 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 CD63P08962 238 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 MCM3P25205 808 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 PPARGP37231 505 aaPredicted RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 BDKRB1P46663 353 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 GLRBP48167 497 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 ELOAQ14241 798 aaKnown RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 SEMA3AQ14563 771 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 PLEKHN1Q494U1 663 aaPredicted RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 PTRHD1Q6GMV3 140 aaKnown RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 SHISA6Q6ZSJ9 500 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 SLC22A15Q8IZD6 547 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 ZADH2Q8N4Q0 377 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 CCDC89Q8N998 374 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 TTC29Q8NA56 475 aaPredicted RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 LINC01555Q8NAE3 123 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 OR4L1Q8NH43 312 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 C1orf54Q8WWF1 131 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 PTERQ96BW5 349 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 ZNF778Q96MU6 729 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 SOX17Q9H6I2 414 aaPredicted RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 RAB6BQ9NRW1 208 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 CATSPERZQ9NTU4 200 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 INTS7Q9NVH2 962 aaKnown RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 ASF1BQ9NVP2 202 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 CUEDC1Q9NWM3 386 aaPredicted RBP13.95□□□□□ -0.18
SDC1-204ENST00000429035 FBXL4Q9UKA2 621 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 ZNF148Q9UQR1 794 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 TCAF1Q9Y4C2 921 aa13.95□□□□□ -0.18
SDC1-204ENST00000429035 ERI2A8K979 691 aaKnown RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 LIASO43766 372 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 KLHL41O60662 606 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 IPO13O94829 963 aaKnown RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 APRTP07741 180 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 ETS1P14921 441 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 ADRA1DP25100 572 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 GRIA3P42263 894 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 CACNA1DQ01668 2161 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 SF1Q15637 639 aaKnown RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 AARS2Q5JTZ9 985 aaKnown RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 IRAK1BP1Q5VVH5 260 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 MRPL14Q6P1L8 145 aaKnown RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 ZNF534Q76KX8 674 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 LURAP1LQ8IV03 231 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 MCATQ8IVS2 390 aaKnown RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 ASZ1Q8WWH4 475 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 CHRNA10Q9GZZ6 450 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 ZNF552Q9H707 407 aaPredicted RBP13.94□□□□□ -0.18
SDC1-204ENST00000429035 SLC6A20Q9NP91 592 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 ATP13A2Q9NQ11 1180 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 SVILO95425 2214 aa13.94□□□□□ -0.18
SDC1-204ENST00000429035 AGPSO00116 658 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 S1PR4O95977 384 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 CD9P21926 228 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 ARSFP54793 590 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 SESN2P58004 480 aaPredicted RBP13.93□□□□□ -0.18
SDC1-204ENST00000429035 RBBP7Q16576 425 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms