RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 TUBB1Q9H4B7 451 aa3.62□□□□□ -1.83
LINC01040-201ENST00000425048 SPHK1Q9NYA1 384 aa3.62□□□□□ -1.83
LINC01040-201ENST00000425048 ZHX1Q9UKY1 873 aaPredicted RBP3.62□□□□□ -1.83
LINC01040-201ENST00000425048 SESN1Q9Y6P5 492 aa3.62□□□□□ -1.83
LINC01040-201ENST00000425048 POP4O95707 220 aaKnown RBP3.61□□□□□ -1.83
LINC01040-201ENST00000425048 EFTUD2Q15029 972 aaKnown RBP eCLIP3.61□□□□□ -1.83
LINC01040-201ENST00000425048 EIPR1Q53HC9 387 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 FHL5Q5TD97 284 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 CES4AQ5XG92 561 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 GDPGP1Q6ZNW5 385 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 CLEC17AQ6ZS10 378 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 G2E3Q7L622 706 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 RTN4RL2Q86UN3 420 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 ZBED8Q8IZ13 594 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 CPXCR1Q8N123 301 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 SUMF1Q8NBK3 374 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 PAPD5Q8NDF8 572 aaKnown RBP3.61□□□□□ -1.83
LINC01040-201ENST00000425048 C11orf45Q8TAV5 145 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 LINC00167Q96N53 147 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 LGMNQ99538 433 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 LMF2Q9BU23 707 aaKnown RBP3.61□□□□□ -1.83
LINC01040-201ENST00000425048 MIS12Q9H081 205 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 GPN1Q9HCN4 374 aaPredicted RBP3.61□□□□□ -1.83
LINC01040-201ENST00000425048 UBN1Q9NPG3 1134 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 OSER1Q9NX31 292 aa3.61□□□□□ -1.83
LINC01040-201ENST00000425048 HCFC1P51610 2035 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 HEPACAM2A8MVW5 462 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 TPPPO94811 219 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 DDX58O95786 925 aaKnown RBP3.6□□□□□ -1.83
LINC01040-201ENST00000425048 RARGP13631 454 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 PRLRP16471 622 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 PON1P27169 355 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 OXTRP30559 389 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 HLCSP50747 726 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 FCHO2Q0JRZ9 810 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 KLHL35Q6PF15 583 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 ZFAND4Q86XD8 727 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 CATSPERDQ86XM0 798 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 TYMSOSQ8TAI1 123 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 CCDC107Q8WV48 283 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 ATXN7L3BQ96GX2 97 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 CMTM3Q96MX0 182 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 TDRD1Q9BXT4 1180 aaKnown RBP3.6□□□□□ -1.83
LINC01040-201ENST00000425048 THAP2Q9H0W7 228 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 B3GAT1Q9P2W7 334 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 B4GALT7Q9UBV7 327 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 DAPK2Q9UIK4 370 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 WIPI2Q9Y4P8 454 aa3.6□□□□□ -1.83
LINC01040-201ENST00000425048 A8MZ25 164 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 GALR3O60755 368 aaPredicted RBP3.59□□□□□ -1.83
LINC01040-201ENST00000425048 PEX14O75381 377 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 WDPCPO95876 746 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 HPP00738 406 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 CDH3P22223 829 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 HERC3Q15034 1050 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 CDHR3Q6ZTQ4 885 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 ARHGAP24Q8N264 748 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 PARP8Q8N3A8 854 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 RFFLQ8WZ73 363 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 FNDC11Q9BVV2 318 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 TSPAN16Q9UKR8 245 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 POMT2Q9UKY4 750 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 GRIP1Q9Y3R0 1128 aa3.59□□□□□ -1.83
LINC01040-201ENST00000425048 A0A087WUV0 522 aaPredicted RBP3.58□□□□□ -1.84
LINC01040-201ENST00000425048 ENO4A6NNW6 628 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 SHISA9B4DS77 424 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 DDHD2O94830 711 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 TPD52P55327 224 aaPredicted RBP3.58□□□□□ -1.84
LINC01040-201ENST00000425048 GCNT1Q02742 428 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 C3AR1Q16581 482 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 KIAA0930Q6ICG6 404 aaPredicted RBP3.58□□□□□ -1.84
LINC01040-201ENST00000425048 AFAP1Q8N556 730 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 NPEPL1Q8NDH3 523 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 KLHL30-AS1Q8NEE0 82 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 OR2AJ1Q8NGZ0 328 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 APOBEC4Q8WW27 367 aaKnown RBP3.58□□□□□ -1.84
LINC01040-201ENST00000425048 RAD9AQ99638 391 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 PPIL3Q9H2H8 161 aaKnown RBP3.58□□□□□ -1.84
LINC01040-201ENST00000425048 DPAGT1Q9H3H5 408 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 FANCIQ9NVI1 1328 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 RUSC2Q8N2Y8 1516 aa3.58□□□□□ -1.84
LINC01040-201ENST00000425048 FRMD3A2A2Y4 597 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 C2orf81A6NN90 581 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 MYO1GB0I1T2 1018 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 XRCC3O43542 346 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 RNASEH2AO75792 299 aaKnown RBP3.57□□□□□ -1.84
LINC01040-201ENST00000425048 TMEM63AO94886 807 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 RTN3O95197 1032 aaPredicted RBP3.57□□□□□ -1.84
LINC01040-201ENST00000425048 TRUB2O95900 331 aaKnown RBP3.57□□□□□ -1.84
LINC01040-201ENST00000425048 PDHA2P29803 388 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 DRD3P35462 400 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 ETV5P41161 510 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 NR1D2Q14995 579 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 TSTQ16762 297 aaKnown RBP3.57□□□□□ -1.84
LINC01040-201ENST00000425048 ODF4Q2M2E3 257 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 FAM131BQ86XD5 332 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 PGAM5Q96HS1 289 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 SPAG5Q96R06 1193 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 DIAPH3Q9NSV4 1193 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 NYAP2Q9P242 653 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms