RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SIPA1Q96FS4 1042 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PGM2Q96G03 612 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TSSK3Q96PN8 268 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TUBGCP5Q96RT8 1024 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PHB2Q99623 299 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM168Q9H0V1 697 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 GTF2IRD1Q9UHL9 959 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 GJE1A6NN92 205 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SLC38A8A6NNN8 435 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PCDHGA12O60330 932 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CCNE2O96020 404 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 OXTRP30559 389 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CRHR1P34998 444 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PIK3CBP42338 1070 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CLCN4P51793 760 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 AP2S1P53680 142 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 VARS2Q5ST30 1063 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 GDPD4Q6W3E5 623 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SERPINA9Q86WD7 417 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SLC9A9Q8IVB4 645 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TIGD4Q8IY51 512 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 LNX2Q8N448 690 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM234Q8WY98 164 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TM9SF4Q92544 642 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 BAP1Q92560 729 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FCGR1BQ92637 280 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 HDAC2Q92769 488 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 KLHL15Q96M94 604 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NPLQ9BXD5 320 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 OR10A4Q9H209 315 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FBXL12Q9NXK8 326 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ARHGAP20Q9P2F6 1191 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ERVK-18Q9QC07 812 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM150BA6NC51 233 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 RTCAO00442 366 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 HMGN1P05114 100 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CTBP2P56545 445 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PLEKHG4Q58EX7 1191 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 RNASE12Q5GAN4 147 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CNKSR3Q6P9H4 555 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF782Q6ZMW2 699 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 USP30Q70CQ3 517 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FAM86B1Q8N7N1 296 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF676Q8N7Q3 588 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ARL10Q8N8L6 244 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 OR2T34Q8NGX1 318 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 OR2T3Q8NH03 318 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SCGB1C1Q8TD33 95 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TWIST2Q8WVJ9 160 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NR4A3Q92570 626 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 IRF7Q92985 503 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ADAD1Q96M93 576 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 MRPL45Q9BRJ2 306 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NAA11Q9BSU3 229 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ABCG8Q9H221 673 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ABCB8Q9NUT2 735 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 URB1O60287 2271 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ERCC6L2Q5T890 1561 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NINQ8N4C6 2090 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 H3BNX3 289 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ATG12O94817 140 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 KDM4BO94953 1096 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CBSLP0DN79 551 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TNFRSF8P28908 595 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CBSP35520 551 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 GLP1RP43220 463 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CYP4F8P98187 520 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF844Q08AG5 666 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NFATC2Q13469 925 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TMCO2Q7Z6W1 182 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 Q9N2J8 555 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PDE7BQ9NP56 450 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 DZANK1Q9NVP4 752 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 EGFL7Q9UHF1 273 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 BACE2Q9Y5Z0 518 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ARL5AQ9Y689 179 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SQORQ9Y6N5 450 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 DIP2CQ9Y2E4 1556 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF670-ZNF695F2Z2N8 137 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF16P17020 682 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MAPK3P27361 379 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RYKP34925 604 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MCCD1P59942 119 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MALLQ13021 153 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 APOBEC3HQ6NTF7 200 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MTFR2Q6P444 385 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SLCO6A1Q86UG4 719 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 KLHL36Q8N4N3 616 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 EPS8L1Q8TE68 723 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 EHD1Q9H4M9 534 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 IPPKQ9H8X2 491 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM184CQ9NVA4 438 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CDK5RAP2Q96SN8 1893 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SH3PXD2BA1X283 911 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 A8MU76 341 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ESR1P03372 595 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RORCP51449 518 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GBX1Q14549 363 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MAD2L1BPQ15013 274 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms