RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TIGD4Q8IY51 512 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PSMG2Q969U7 264 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 LRRC58Q96CX6 371 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 C5orf34Q96MH7 638 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 GPER1Q99527 375 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC22A4Q9H015 551 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 SNTG1Q9NSN8 517 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 OAZ3Q9UMX2 235 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PCYT1BQ9Y5K3 369 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PITPNM1O00562 1244 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 POP4O95707 220 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PRNPP04156 253 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 GNAZP19086 355 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 NT5EP21589 574 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PITPNAQ00169 270 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 DCAF12L1Q5VU92 463 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 ANO7Q6IWH7 933 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 LINGO4Q6UY18 593 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 CEP295NLQ96MC4 621 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 CST11Q9H112 138 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 IGFLR1Q9H665 355 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D17Q9HA65 648 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 AJAP1Q9UKB5 411 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 CBY1Q9Y3M2 126 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PRORSD1PA6NEY8 169 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 ARPC2O15144 300 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PAPSS2O95340 614 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 DNTTP04053 509 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 GSTT2BP0CG30 244 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 POU2F1P14859 743 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 DNAJB1P25685 340 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 IGFALSP35858 605 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 DCDC1P59894 354 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF155Q12901 538 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 SAMD14Q8IZD0 417 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 TCEAL3Q969E4 200 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC35G5Q96KT7 338 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 HERC2P3Q9BVR0 1158 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PCBD2Q9H0N5 130 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 ZIM2Q9NZV7 527 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 C12orf71A8MTZ7 269 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 NT5C1B-RDH14C9J2C7 533 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 SYN3O14994 580 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 GLUD1P00367 558 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 CMPK1P30085 196 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 ZMYND11Q15326 602 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC10A6Q3KNW5 377 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 ATXN7L2Q5T6C5 722 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 XKRXQ6PP77 449 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 OR10G2Q8NGC3 310 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 UPF1Q92900 1129 aaKnown RBP eCLIP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 HAPLN3Q96S86 360 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 POLR2J3Q9H1A7 115 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 TVP23BQ9NYZ1 205 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 TMEM9Q9P0T7 183 aa10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PTBP2Q9UKA9 531 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-203ENST00000396595 PLD2O14939 933 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ITM2AO43736 263 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 STBD1O95210 358 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 VNN1O95497 513 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 MTHFD1P11586 935 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 UGT1A6P19224 532 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PRPS1L1P21108 318 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 UGT1A1P22309 533 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 UGT1A4P22310 534 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 TM4SF1P30408 202 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 DNAJA1P31689 397 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 UGT1A3P35503 534 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CCL23P55773 120 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 IRF9Q00978 393 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC18A2Q05940 514 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 NPTX1Q15818 432 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 BATFQ16520 125 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 TREML2Q5T2D2 321 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CADM2Q8N3J6 435 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 OR4C6Q8NH72 309 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CCDC86Q9H6F5 360 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ZFP37Q9Y6Q3 630 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 NFAT5O94916 1531 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF536O15090 1300 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 OR2AG2A6NM03 316 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 H0YJX3 145 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ACOX3O15254 700 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 TFPIP10646 304 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 FMO3P31513 532 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 NDUFV1P49821 464 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 HSPB3Q12988 150 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 RFTN1Q14699 578 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 NDUFA9Q16795 377 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PLCZ1Q86YW0 608 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 TMEM199Q8N511 208 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 OXR1Q8N573 874 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ZBED6CLQ96FA7 236 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CAMK1GQ96NX5 476 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 OR52B2Q96RD2 323 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 MGME1Q9BQP7 344 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF358Q9NW07 568 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 COL20A1Q9P218 1284 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 DEC1Q9P2X7 70 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms