RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TXNDC16Q9P2K2 825 aa21■□□□□ 0.95
CLN3-207ENST00000395653 LAMA5O15230 3695 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 FAM95CA0A1B0GW59 222 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 SLC9B1P1A6NJY1 282 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 MYO1CO00159 1063 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 PIAS1O75925 651 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 SLC5A12Q1EHB4 618 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 FBXO38Q6PIJ6 1188 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 LRRC69Q6ZNQ3 347 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 SPNS2Q8IVW8 549 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 OR9A1PQ8NGU1 263 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 DENND1AQ8TEH3 1009 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 EEF1AKMT1Q8WVE0 214 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 VPS39Q96JC1 886 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 TRAPPC9Q96Q05 1148 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 SOHLH2Q9NX45 425 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 LNPEPQ9UIQ6 1025 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 ZFHX4Q86UP3 3567 aa20.99■□□□□ 0.95
CLN3-207ENST00000395653 URB1O60287 2271 aaKnown RBP20.99■□□□□ 0.95
CLN3-207ENST00000395653 ISM1B1AKI9 464 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 ZBTB14O43829 449 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 LIPCP11150 499 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 ERGP11308 486 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 FGF5P12034 268 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 FOLR1P15328 257 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 ST6GAL1P15907 406 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 NAB1Q13506 487 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 KBTBD12Q3ZCT8 623 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 TMTC4Q5T4D3 741 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 IFT20Q8IY31 132 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 MYO1HQ8N1T3 1032 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 FBF1Q8TES7 1133 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 ELMO2Q96JJ3 720 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 PDE7BQ9NP56 450 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 KMT2BQ9UMN6 2715 aaPredicted RBP20.98■□□□□ 0.95
CLN3-207ENST00000395653 PKD1L2Q7Z442 2459 aa20.98■□□□□ 0.95
CLN3-207ENST00000395653 A0A0J9YY10 115 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 KRT87PA6NCN2 255 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 STMND1H3BQB6 276 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 TSPAN12O95859 305 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 EBLN1P0CF75 366 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 MAP4P27816 1152 aaKnown RBP20.97■□□□□ 0.95
CLN3-207ENST00000395653 GP5P40197 560 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 IL2P60568 153 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 SP140Q13342 867 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 TUBB3Q13509 450 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 KCNAB1Q14722 419 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 ARHGAP19Q14CB8 494 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 CYP2A13Q16696 494 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 BPHLQ86WA6 291 aaPredicted RBP20.97■□□□□ 0.95
CLN3-207ENST00000395653 ZFAND4Q86XD8 727 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 CTAGE3PQ8IX95 158 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 LINGO1Q96FE5 620 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 NAF1Q96HR8 494 aaKnown RBP20.97■□□□□ 0.95
CLN3-207ENST00000395653 RBBP8Q99708 897 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 SYTL2Q9HCH5 934 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 FGF21Q9NSA1 209 aa20.97■□□□□ 0.95
CLN3-207ENST00000395653 MAP3K7O43318 606 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 PRICKLE3O43900 615 aaPredicted RBP20.96■□□□□ 0.95
CLN3-207ENST00000395653 FKBP9O95302 570 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 C8GP07360 202 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 RHOXF2BP0C7M4 288 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 MSL3P1P0C860 447 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 PHBP35232 272 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 HSD17B2P37059 387 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 TUBB4BP68371 445 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 CLN3Q13286 438 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.96■□□□□ 0.95
CLN3-207ENST00000395653 UBE2R2Q712K3 238 aaPredicted RBP20.96■□□□□ 0.95
CLN3-207ENST00000395653 TRIM73Q86UV7 250 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 DTX1Q86Y01 620 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 SPACA3Q8IXA5 215 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 LMNTD1Q8N9Z9 388 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 LRRN4CLQ8ND94 238 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 PDLIM5Q96HC4 596 aaKnown RBP20.96■□□□□ 0.95
CLN3-207ENST00000395653 PKP4Q99569 1192 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 RHOXF2Q9BQY4 288 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 SPRY4Q9C004 299 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 CHRNA10Q9GZZ6 450 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 POPDC3Q9HBV1 291 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 NINJ2Q9NZG7 142 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 RARRES3Q9UL19 164 aa20.96■□□□□ 0.95
CLN3-207ENST00000395653 ZNF839A8K0R7 811 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 SLC16A5O15375 505 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 PVRP15151 417 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 ZNF37AP17032 561 aaPredicted RBP20.95■□□□□ 0.95
CLN3-207ENST00000395653 SAT1P21673 171 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 PGGT1BP53609 377 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 TAS2R39P59534 338 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 POU4F1Q01851 419 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 TAX1BP1Q86VP1 789 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 PPP1R3BQ86XI6 285 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 C2orf73Q8N5S3 287 aaPredicted RBP20.95■□□□□ 0.95
CLN3-207ENST00000395653 PPM1NQ8N819 430 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 C19orf47Q8N9M1 422 aaKnown RBP20.95■□□□□ 0.95
CLN3-207ENST00000395653 TCTN2Q96GX1 697 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 FCRL4Q96PJ5 515 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 SLC12A9Q9BXP2 914 aa20.95■□□□□ 0.95
CLN3-207ENST00000395653 CDC42EP4Q9H3Q1 356 aaKnown RBP20.95■□□□□ 0.95
CLN3-207ENST00000395653 TMEM184BQ9Y519 407 aaPredicted RBP20.95■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms