RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EBF1Q9UH73 591 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ZDHHC2Q9UIJ5 367 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SNAPC5O75971 98 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 GOT2P00505 430 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CES1P23141 567 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 GRIA1P42261 906 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF157P51786 506 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SNRPD2P62316 118 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ARFRP1Q13795 201 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 IKBKEQ14164 716 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CELF3Q5SZQ8 465 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SLC7A6OSQ96CW6 309 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SCRN2Q96FV2 425 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SPATC1LQ9H0A9 340 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SMURF2Q9HAU4 748 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 HIF3AQ9Y2N7 669 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 KCNIP3Q9Y2W7 256 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SLC35F4A4IF30 521 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CLCA1A8K7I4 914 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 FOSL1P15407 271 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ADRA1BP35368 520 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 MAP3K8P41279 467 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 GSK3BP49841 420 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 GPX6P59796 221 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CHIT1Q13231 466 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 MED27Q6P2C8 311 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 DCLRE1AQ6PJP8 1040 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 PLEKHH3Q7Z736 793 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 IQCHQ86VS3 1027 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SCML4Q8N228 414 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SIDT2Q8NBJ9 832 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 NXPE2Q96DL1 559 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 RGCCQ9H4X1 137 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF282Q9UDV7 671 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 CPA4Q9UI42 421 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 STXBP5LQ9Y2K9 1186 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 PRAMEF12O95522 483 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 NT5EP21589 574 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 IGFALSP35858 605 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 DGKEP52429 567 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 LRRC37A5PQ49AS3 106 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SLC25A25Q6KCM7 469 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 DPY19L3Q6ZPD9 716 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 MOB2Q70IA6 237 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 COMMD7Q86VX2 200 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 TRUB1Q8WWH5 349 aaKnown RBP11.62□□□□□ -0.55
SYNPO-202ENST00000394243 BSNDQ8WZ55 320 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 SUSD6Q92537 303 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 FAIMQ9NVQ4 179 aa11.62□□□□□ -0.55
SYNPO-202ENST00000394243 GLYATL1P3A0A0U1RQE8 302 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 NEMP2A6NFY4 417 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MEIS2O14770 477 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 EDNRAP25101 427 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CD97P48960 835 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 OR12D2P58182 307 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SCARB2Q14108 478 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CBX2Q14781 532 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SDHAF4Q5VUM1 108 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ZSCAN1Q8NBB4 408 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 OR10G6Q8NH81 332 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MYO19Q96H55 970 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM209Q96SK2 561 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 FARSBQ9NSD9 589 aaKnown RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 PAK1IP1Q9NWT1 392 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CEMIPQ8WUJ3 1361 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM233B4DJY2 109 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 DIRAS1O95057 198 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 RASGRP1O95267 797 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ANXA3P12429 323 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 EPCAMP16422 314 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CNTN2Q02246 1040 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 PIGFQ07326 219 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 PUM1Q14671 1186 aaKnown RBP eCLIP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 GFOD2Q3B7J2 385 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 OR10Q1Q8NGQ4 319 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ARMC5Q96C12 935 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TNFRSF10DQ9UBN6 386 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF208O43345 1280 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MT-CYBP00156 380 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 PRPF38BQ5VTL8 546 aaKnown RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TNFAIP8L2Q6P589 184 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 BIRC7Q96CA5 298 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CDK15Q96Q40 435 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MRPL9Q9BYD2 267 aaKnown RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ZBTB26Q9HCK0 441 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 LYARQ9NX58 379 aaKnown RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TAS2R10Q9NYW0 307 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 GSKIPQ9P0R6 139 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SLC33A1O00400 549 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 TCEA1P23193 301 aaKnown RBP11.61□□□□□ -0.55
SYNPO-202ENST00000394243 DNASE1P24855 282 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MAP2K4P45985 399 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 SCNN1GP51170 649 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ITPK1Q13572 414 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 CAPSQ13938 189 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 MSANTD2Q6P1R3 559 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 ATP6V1C2Q8NEY4 427 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 KLRC2P26717 231 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 E2F1Q01094 437 aa11.61□□□□□ -0.55
SYNPO-202ENST00000394243 DSC2Q02487 901 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms