RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ADARP55265 1226 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 DLG1Q12959 904 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CCDC126Q96EE4 140 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 THAP1Q9NVV9 213 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 FBXW2Q9UKT8 454 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 OR6C74A6NCV1 312 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TMEM247A6NEH6 219 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 KMOO15229 486 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 OR6B1O95007 311 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 IGLV3-27P01718 113 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 PROCP04070 461 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 COL9A1P20849 921 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 SLC22A9Q8IVM8 553 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 DEFB107AQ8IZN7 70 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 PTCD2Q8WV60 388 aaKnown RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 PIH1D2Q8WWB5 315 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 BTBD9Q96Q07 612 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 DPYSL5Q9BPU6 564 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 MRPL57Q9BQC6 102 aaKnown RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 GAREM1Q9H706 876 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 NLE1Q9NVX2 485 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 AK5Q9Y6K8 562 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 SPACA6W5XKT8 324 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 IGLV3-10A0A075B6K4 115 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 A8MUA0 341 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 SERPINE1P05121 402 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 CTSLP07711 333 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 PTCHD3Q3KNS1 767 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 ATP6AP1LQ52LC2 224 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 ZC3H14Q6PJT7 736 aaKnown RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 DSELQ8IZU8 1212 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 CATSPER1Q8NEC5 780 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 MZB1Q8WU39 189 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 ATL1Q8WXF7 558 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 SERPINI1Q99574 410 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 MACROD1Q9BQ69 325 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 KIFC1Q9BW19 673 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 EBPLQ9BY08 206 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TRIM39Q9HCM9 518 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TMEM202A6NGA9 273 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 KHNYNO15037 678 aaKnown RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TPST1O60507 370 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 C9P02748 559 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 GABRG2P18507 467 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TNFRSF4P43489 277 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 RPL26P61254 145 aaKnown RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 HNRNPKP61978 463 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 CTBSQ01459 385 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 C18orf21Q32NC0 220 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 CYP20A1Q6UW02 462 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 CCL4L1Q8NHW4 92 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TCF12Q99081 682 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 CCDC106Q9BWC9 280 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 GMEB1Q9Y692 573 aa10.05□□□□□ -0.8
COL6A3-205ENST00000392004 TCF20Q9UGU0 1960 aaKnown RBP10.05□□□□□ -0.8
COL6A3-205ENST00000392004 A0A088AWK7 358 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 E7ESA3 106 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CASP9P55211 416 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 HMGCS1Q01581 520 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 DCTN2Q13561 401 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CCDC153Q494R4 210 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 TCHHL1Q5QJ38 904 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CACHD1Q5VU97 1274 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 GPRIN3Q6ZVF9 776 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 SYT12Q8IV01 421 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 RASGRP3Q8IV61 690 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 SDR16C5Q8N3Y7 309 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ACVR1CQ8NER5 493 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 SNRNP27Q8WVK2 155 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ZNF514Q96K75 400 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 BBS4Q96RK4 519 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 SIKE1Q9BRV8 207 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 GRIP2Q9C0E4 1043 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 GIMAP4Q9NUV9 329 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 SUSD2Q9UGT4 822 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 EIF3LQ9Y262 564 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PI15O43692 258 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CHRNGP07510 517 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ADPRHP54922 357 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CDKN2DP55273 166 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ATP6V0D1P61421 351 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PTSQ03393 145 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 FCHO2Q0JRZ9 810 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 TBL3Q12788 808 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ELOCQ15369 112 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 TOMM20Q15388 145 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ARL13AQ5H913 290 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 RALGPS1Q5JS13 557 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 KIAA0408Q6ZU52 694 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CEP97Q8IW35 865 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 UBALD2Q8IYN6 164 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CRIPAKQ8N1N5 446 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 OR5AR1Q8NGP9 310 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PDXPQ96GD0 296 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CNBD2Q96M20 576 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ASB2Q96Q27 587 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 OBP2AQ9NY56 170 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 NCOR2Q9Y618 2525 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 WASH4PA8MWX3 477 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PRAMEF26H0Y7S4 382 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms