RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HMOX2P30519 316 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC6A12P48065 614 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 CCR5P51681 352 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 DMPKQ09013 629 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 PTK2BQ14289 1009 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 ZNF423Q2M1K9 1284 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 PDZD3Q86UT5 571 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SNX31Q8N9S9 440 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 METTL6Q8TCB7 284 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 ESAMQ96AP7 390 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 PPP1R36Q96LQ0 422 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC25A23Q9BV35 468 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 LGR4Q9BXB1 951 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC29A3Q9BZD2 475 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 DNAJC11Q9NVH1 559 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 TRPS1Q9UHF7 1281 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 PSMD13Q9UNM6 376 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 MAGEA13PA6NCF6 341 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 PSMD12O00232 456 aaPredicted RBP17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 WDR47O94967 919 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC35G4P0C7Q5 338 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 YPEL5P62699 121 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 PPP2CBP62714 309 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 PPP2CAP67775 309 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 ZP2Q05996 745 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 PLA2G4EQ3MJ16 856 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 UGT3A2Q3SY77 523 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 FBXO48Q5FWF7 155 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM198Q66K66 360 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 Q6ZS52 159 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 C11orf96Q7Z7L8 435 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 CATSPER1Q8NEC5 780 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 FLCNQ8NFG4 579 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 MIEF2Q96C03 454 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 CDRT15Q96T59 188 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 KLHL4Q9C0H6 718 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 DMTF1Q9Y222 760 aa17.71■□□□□ 0.43
CCDC88C-203ENST00000389856 ZNF839A8K0R7 811 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 BBIP1A8MTZ0 92 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 TRIM38O00635 465 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 OR4F21O95013 312 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 CLDN9O95484 217 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 C1orf105O95561 183 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 ACSL1P33121 698 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 STX1BP61266 288 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 NFE2L1Q14494 772 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 NUMA1Q14980 2115 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 METRNLQ641Q3 311 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 IZUMO2Q6UXV1 221 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 RNF165Q6ZSG1 346 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 KLHDC8AQ8IYD2 350 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 ZNF687Q8N1G0 1237 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 RAB42Q8N4Z0 105 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 PHC3Q8NDX5 983 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 RAD51AP1Q96B01 352 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 CCDC124Q96CT7 223 aaKnown RBP17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 ACTR8Q9H981 624 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 TNFRSF12AQ9NP84 129 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 SCOCQ9UIL1 159 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 HS3ST3A1Q9Y663 406 aa17.7■□□□□ 0.42
CCDC88C-203ENST00000389856 FAM170BA6NMN3 283 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PPP6CO00743 305 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 OR7A17O14581 309 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PIP5K1BO14986 540 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 LATO43561 262 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 UGDHO60701 494 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 BCAS2O75934 225 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 APBB3O95704 486 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 KRT6AP02538 564 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 KRT6BP04259 564 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PDHA2P29803 388 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 HSD17B2P37059 387 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 KRT6CP48668 564 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 TFF2Q03403 129 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 TRAF3Q13114 568 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 FASTKQ14296 549 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 NFATC4Q14934 902 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 C18orf21Q32NC0 220 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PTCHD3Q3KNS1 767 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 TCHHL1Q5QJ38 904 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 AGTRAPQ6RW13 159 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 LARP4Q71RC2 724 aaKnown RBP eCLIP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 CDYL2Q8N8U2 506 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 OR4F6Q8NGB9 312 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 OR52B6Q8NGF0 335 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 FAM174AQ8TBP5 190 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PYDC1Q8WXC3 89 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 OR52A5Q9H2C5 316 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 GULP1Q9UBP9 304 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 G3BP2Q9UN86 482 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 ASB1Q9Y576 335 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 ZFC3H1O60293 1989 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 SLC34A2O95436 690 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 CEACAM5P06731 702 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 CAPN1P07384 714 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 SNRPB2P08579 225 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 LBPP18428 481 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 MRPL19P49406 292 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 CLCN2P51788 898 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 ERVPABLB-1P60509 514 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms