RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 PCDHB8Q9UN66 801 aa13.97□□□□□ -0.17
RTF1-201ENST00000389629 STK16O75716 305 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 OR56A5P0C7T3 313 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 CD1DP15813 335 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 RFX3P48380 749 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 ARSDP51689 593 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 RPS14P62263 151 aaKnown RBP13.96□□□□□ -0.17
RTF1-201ENST00000389629 RETSATQ6NUM9 610 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 LINGO4Q6UY18 593 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 VANGL1Q8TAA9 524 aaPredicted RBP13.96□□□□□ -0.17
RTF1-201ENST00000389629 EFHD2Q96C19 240 aaPredicted RBP13.96□□□□□ -0.17
RTF1-201ENST00000389629 OR2B2Q9GZK3 357 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 COL2A1P02458 1487 aaPredicted RBP13.96□□□□□ -0.17
RTF1-201ENST00000389629 PHLPP1O60346 1717 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 ACLYP53396 1101 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 MAPK12P53778 367 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 IL10RBQ08334 325 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 USP30Q70CQ3 517 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 C14orf80Q86SX3 495 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 CLEC14AQ86T13 490 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 ZNF671Q8TAW3 534 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 ART5Q96L15 291 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 C3orf30Q96M34 536 aa13.96□□□□□ -0.17
RTF1-201ENST00000389629 CDK5RAP1Q96SZ6 601 aaKnown RBP13.96□□□□□ -0.17
RTF1-201ENST00000389629 PRAMEF33A0A0G2JMD5 474 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 FAM172BPA6NC97 362 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 PPP6CO00743 305 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 PRAMEF10O60809 474 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 ERN1O75460 977 aaKnown RBP13.96□□□□□ -0.18
RTF1-201ENST00000389629 RORCP51449 518 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 PAGE3Q5JUK9 113 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 BHLHB9Q6PI77 547 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 C7orf57Q8NEG2 295 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 EEF1AKMT1Q8WVE0 214 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 KIAA1191Q96A73 305 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 FAM47E-STBD1D6RA91 191 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 LCKP06239 509 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 DDX5P17844 614 aaKnown RBP13.96□□□□□ -0.18
RTF1-201ENST00000389629 GDF5P43026 501 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 PRKAG1P54619 331 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 FOXA1P55317 472 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 SF3B4Q15427 424 aaKnown RBP eCLIP13.96□□□□□ -0.181e-6■□□□□ 10.6
RTF1-201ENST00000389629 MSANTD2Q6P1R3 559 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 CYP4V2Q6ZWL3 525 aaPredicted RBP13.96□□□□□ -0.18
RTF1-201ENST00000389629 ISCA2Q86U28 154 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 MMAAQ8IVH4 418 aaKnown RBP13.96□□□□□ -0.18
RTF1-201ENST00000389629 PYURFQ96I23 114 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 GSTO2Q9H4Y5 243 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 MRM3Q9HC36 420 aaKnown RBP13.96□□□□□ -0.18
RTF1-201ENST00000389629 CAPN10Q9HC96 672 aa13.96□□□□□ -0.18
RTF1-201ENST00000389629 S1PR4O95977 384 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 HTR1EP28566 365 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 UGT2B15P54855 530 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 YBEYP58557 167 aaPredicted RBP13.95□□□□□ -0.18
RTF1-201ENST00000389629 RBFAQ8N0V3 343 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 OR4A15Q8NGL6 344 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 KCNH4Q9UQ05 1017 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 DYRK1BQ9Y463 629 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ZNF451Q9Y4E5 1061 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ZNF195O14628 629 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ZNF45Q02386 682 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 CREB5Q02930 508 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 TUSC3Q13454 348 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ZNF181Q2M3W8 571 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 WSCD2Q2TBF2 565 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 CPTPQ5TA50 214 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 BICRALQ6AI39 1079 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ATG10Q9H0Y0 220 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 NECTIN3Q9NQS3 549 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 C12orf71A8MTZ7 269 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 NUAK1O60285 661 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 EDNRBP24530 442 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 PPP2R1BP30154 601 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ACVRL1P37023 503 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 LGALS3BPQ08380 585 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 GANABQ14697 944 aaKnown RBP13.95□□□□□ -0.18
RTF1-201ENST00000389629 CRTC2Q53ET0 693 aaPredicted RBP13.95□□□□□ -0.18
RTF1-201ENST00000389629 TUBA3EQ6PEY2 450 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 RASSF6Q6ZTQ3 369 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 SLC38A4Q969I6 547 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 C11orf24Q96F05 449 aaPredicted RBP13.95□□□□□ -0.18
RTF1-201ENST00000389629 TSGA13Q96PP4 275 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 CPNE5Q9HCH3 593 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ANKMY1Q9P2S6 941 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 MAFKO60675 156 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 SDC2P34741 201 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 HTR2BP41595 481 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 MLLT6P55198 1093 aaPredicted RBP13.95□□□□□ -0.18
RTF1-201ENST00000389629 RAPSNQ13702 412 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 KIAA1614Q5VZ46 1190 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 CDC73Q6P1J9 531 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ERICH5Q6P6B1 374 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 OR4F6Q8NGB9 312 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 POP5Q969H6 163 aaKnown RBP13.95□□□□□ -0.18
RTF1-201ENST00000389629 PCDH10Q9P2E7 1040 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 ENPP5Q9UJA9 477 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 PCDHB7Q9Y5E2 793 aa13.95□□□□□ -0.18
RTF1-201ENST00000389629 MAGEB17A8MXT2 336 aa13.94□□□□□ -0.18
RTF1-201ENST00000389629 ORC5O43913 435 aa13.94□□□□□ -0.18
RTF1-201ENST00000389629 VIPP01282 170 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms