RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 TPK1Q9H3S4 243 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 CSNK1G1Q9HCP0 422 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 TMEM98Q9Y2Y6 226 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 RWDD3Q9Y3V2 267 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 NRAPQ86VF7 1730 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 EFCAB10A6NFE3 127 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 URADA6NGE7 173 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 FAM25AB3EWG3 89 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 FAM25CB3EWG5 89 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 FAM25GB3EWG6 89 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 AHCYL1O43865 530 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 TULP3O75386 442 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 GJB3O75712 270 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 RAP2AP10114 183 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 CHRM1P11229 460 aaPredicted RBP12.9□□□□□ -0.34
NPHP4-203ENST00000378169 VIPR1P32241 457 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 NRIP1P48552 1158 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 CEACAM7Q14002 265 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 PTCHD4Q6ZW05 846 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 BOCQ9BWV1 1114 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 BRINP2Q9C0B6 783 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 OR51B5Q9H339 312 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 MTG2Q9H4K7 406 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 HMG20AQ9NP66 347 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 INTS7Q9NVH2 962 aaKnown RBP12.9□□□□□ -0.34
NPHP4-203ENST00000378169 DNAJC15Q9Y5T4 150 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 COL22A1Q8NFW1 1626 aaPredicted RBP12.9□□□□□ -0.34
NPHP4-203ENST00000378169 LIN7AO14910 233 aaPredicted RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 PRPS1L1P21108 318 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 COPZ1P61923 177 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 SH3BP2P78314 561 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 LAPTM5Q13571 262 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 SEMA3AQ14563 771 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 GPR153Q6NV75 609 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 CHMP1BQ7LBR1 199 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 TMEM25Q86YD3 366 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 WDR36Q8NI36 951 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 LMLNQ96KR4 655 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 CXorf21Q9HAI6 301 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 MAGEE1Q9HCI5 957 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ZIM2Q9NZV7 527 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ERGIC3Q9Y282 383 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 DGKBQ9Y6T7 804 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 NUP205Q92621 2012 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 PIPSLA2A3N6 862 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 TRIM24O15164 1050 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ADAMTS4O75173 837 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 PDE9AO76083 593 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 SEC24AO95486 1093 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 CCNYL3P0C7X3 344 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 CD70P32970 193 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ACTR1BP42025 376 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 VEGFBP49765 207 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ACTR1AP61163 376 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 GNA13Q14344 377 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 HEPACAMQ14CZ8 416 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 SYVN1Q86TM6 617 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 LEMD2Q8NC56 503 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 TFGQ92734 400 aaPredicted RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 SGIP1Q9BQI5 828 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 C3orf14Q9HBI5 128 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 GULP1Q9UBP9 304 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 PAIP2BQ9ULR5 123 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 DMTF1Q9Y222 760 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 USP3Q9Y6I4 520 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 DOCK2Q92608 1830 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 MANBAO00462 879 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 BCAS2O75934 225 aaPredicted RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 IFNW1P05000 195 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 DNAJB1P25685 340 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 HMGCLP35914 325 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 CDK9P50750 372 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 C1QTNF8P60827 252 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 MEF2AQ02078 507 aaPredicted RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ILF3Q12906 894 aaKnown RBP eCLIP12.89□□□□□ -0.354e-7■■■■□ 25.5
NPHP4-203ENST00000378169 TRAP1Q12931 704 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 MTAPQ13126 283 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ZNHIT3Q15649 155 aaPredicted RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 TAZQ16635 292 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ARMCX4Q5H9R4 360 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ANKRD26P1Q6NSI1 321 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 RNF44Q7L0R7 432 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 CELF5Q8N6W0 485 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 WFIKKN2Q8TEU8 576 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 OVCA2Q8WZ82 227 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 DHRS4Q9BTZ2 278 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 WDR26Q9H7D7 661 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 BACE2Q9Y5Z0 518 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 BCORQ6W2J9 1755 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 TRIM43BA6NCK2 446 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 STX16O14662 325 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 SMAD6O43541 496 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 ERN1O75460 977 aaKnown RBP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 FSHRP23945 695 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 MAGEA6P43360 314 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 GSTM5P46439 218 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 HNMTP50135 292 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 PTSQ03393 145 aa12.89□□□□□ -0.35
NPHP4-203ENST00000378169 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.89□□□□□ -0.35
NPHP4-203ENST00000378169 MERTKQ12866 999 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms