RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 RBM20Q5T481 1227 aaKnown RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 AGAP9Q5VTM2 703 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 LYPLAL1Q5VWZ2 237 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 SPATA21Q7Z572 469 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 ZSWIM9Q86XI8 627 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 CEP97Q8IW35 865 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 FAM20CQ8IXL6 584 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 SORCS1Q8WY21 1168 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 LPGAT1Q92604 370 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 KLHL32Q96NJ5 620 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 TSSK1BQ9BXA7 367 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 MYLK2Q9H1R3 596 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 TMEM216Q9P0N5 145 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 DKK3Q9UBP4 350 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 U3KQE9 123 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 ATXN2Q99700 1313 aaKnown RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 RALGAPA1Q6GYQ0 2036 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 TEX51A0A1B0GUA7 166 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 NPIPB15A6NHN6 443 aaPredicted RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 CLDN7O95471 211 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 FUCA1P04066 466 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 PRNPP04156 253 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 LTA4HP09960 611 aaKnown RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 TROVE2P10155 538 aaKnown RBP eCLIP8.6□□□□□ -1.03
TPM3-213ENST00000368545 BGNP21810 368 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 CD9P21926 228 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 GJA4P35212 333 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 HOXD12P35452 270 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 PTGER3P43115 390 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 XIAPP98170 497 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 TRIM25Q14258 630 aaKnown RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 PCLAFQ15004 111 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 CHI3L2Q15782 390 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 ITPRIPL2Q3MIP1 535 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 ZNF805Q5CZA5 627 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 FAM209BQ5JX69 171 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 OGFOD3Q6PK18 319 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 PAOXQ6QHF9 649 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 FAM47EQ6ZV65 393 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 SNX20Q7Z614 316 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 LDB1Q86U70 411 aaPredicted RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 PHYKPLQ8IUZ5 450 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 LYSMD2Q8IV50 215 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 CENPLQ8N0S6 344 aaPredicted RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 PLD6Q8N2A8 252 aaKnown RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 PPP1R14CQ8TAE6 165 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 EID2BQ96D98 161 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 PLEKHG4BQ96PX9 1271 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 SMIM14Q96QK8 99 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 NDNQ99608 321 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 OLFM1Q99784 485 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 KXD1Q9BQD3 176 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 MECRQ9BV79 373 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 TRMT61BQ9BVS5 477 aaKnown RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 BPIFA1Q9NP55 256 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 COA3Q9Y2R0 106 aaPredicted RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 CRYL1Q9Y2S2 319 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 MTF2Q9Y483 593 aaPredicted RBP8.6□□□□□ -1.03
TPM3-213ENST00000368545 PLXNA2O75051 1894 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 TICRRQ7Z2Z1 1910 aa8.6□□□□□ -1.03
TPM3-213ENST00000368545 UBA6A0AVT1 1052 aaPredicted RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 SRP72O76094 671 aaKnown RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 WISP3O95389 354 aaPredicted RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 TGDSO95455 350 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 ESR1P03372 595 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 PYGLP06737 847 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 MYL2P10916 166 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 CPA3P15088 417 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 NOS3P29474 1203 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 ALDH3A1P30838 453 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 SDHAP31040 664 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 GDI1P31150 447 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 OPRD1P41143 372 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 SLC6A11P48066 632 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 ASPHQ12797 758 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 ARHGEF7Q14155 803 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 ELAVL3Q14576 367 aaKnown RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 LPAL2Q16609 132 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 HNRNPA1L2Q32P51 320 aaKnown RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 GPR33Q49SQ1 333 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 LRRC66Q68CR7 880 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 LRRC8EQ6NSJ5 796 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 TSSK4Q6SA08 328 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 CRTC1Q6UUV9 634 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 PARM1Q6UWI2 310 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 ZNF398Q8TD17 642 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 KCTD4Q8WVF5 259 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 OR8D1Q8WZ84 308 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 FGF14Q92915 247 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 C7orf26Q96N11 449 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 MRPL57Q9BQC6 102 aaKnown RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 PLA2G2FQ9BZM2 168 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 MRPL46Q9H2W6 279 aaKnown RBP8.59□□□□□ -1.03
TPM3-213ENST00000368545 BRD9Q9H8M2 597 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 SLCO1B3Q9NPD5 702 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 TAS2R13Q9NYV9 303 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 PKD2L2Q9NZM6 624 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 KLHL14Q9P2G3 628 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 FBLN5Q9UBX5 448 aa8.59□□□□□ -1.03
TPM3-213ENST00000368545 PCDHB1Q9Y5F3 818 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms