RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 TRPC1P48995 793 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 RPIAP49247 311 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ZNF33BQ06732 778 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 CD47Q08722 323 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ZNF691Q5VV52 312 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 SHQ1Q6PI26 577 aaKnown RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 DNAJC14Q6Y2X3 702 aaPredicted RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 TPRG1Q6ZUI0 275 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 DNAJB7Q7Z6W7 309 aaPredicted RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 APCDD1Q8J025 514 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PGBD3Q8N328 593 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 L3MBTL4Q8NA19 623 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 SETD9Q8NE22 299 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 OR6K2Q8NGY2 324 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ABTB1Q969K4 478 aaPredicted RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 PLEKHA8Q96JA3 519 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 CCDC138Q96M89 665 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 HHIPQ96QV1 700 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 COPS8Q99627 209 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 BEGAINQ9BUH8 593 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 SLC12A9Q9BXP2 914 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 TNKS2Q9H2K2 1166 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ELOVL6Q9H5J4 265 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 NMRK2Q9NPI5 230 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ABCB8Q9NUT2 735 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ARL15Q9NXU5 204 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 LSM7Q9UK45 103 aaKnown RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 SAMD4AQ9UPU9 718 aaKnown RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 ZNF510Q9Y2H8 683 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PPIL1Q9Y3C6 166 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 IGLV3-16A0A075B6K0 115 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 SLC16A5O15375 505 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 HS6ST1O60243 411 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PRMT3O60678 531 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PDYNP01213 254 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 SOD2P04179 222 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 IL7RP16871 459 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 EPORP19235 508 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PIGAP37287 484 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 IST1P53990 364 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 EPHB3P54753 998 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ISL1P61371 349 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ABRQ12979 859 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 SP140Q13342 867 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 GBX1Q14549 363 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 TCTN1Q2MV58 587 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 DPY19L1Q2PZI1 675 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 GTDC1Q4AE62 458 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 TMEM150AQ86TG1 271 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 DCP2Q8IU60 420 aaKnown RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 CPXM2Q8N436 756 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 DDHD1Q8NEL9 900 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PXYLP1Q8TE99 480 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 TRUB1Q8WWH5 349 aaKnown RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 SELENOMQ8WWX9 145 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 TANKQ92844 425 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 RAD21L1Q9H4I0 556 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 DNAAF2Q9NVR5 837 aaKnown RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 RHBDL2Q9NX52 303 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 KIAA1522Q9P206 1035 aaPredicted RBP13.94□□□□□ -0.18
CD48-201ENST00000368045 MAFFQ9ULX9 164 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 ERVW-1Q9UQF0 538 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 B3GNT3Q9Y2A9 372 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 PCDHGB1Q9Y5G3 927 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 HSPE1-MOB4S4R3N1 261 aa13.94□□□□□ -0.18
CD48-201ENST00000368045 CROCCQ5TZA2 2017 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 PABPN1LA6NDY0 278 aaKnown RBP13.93□□□□□ -0.18
CD48-201ENST00000368045 TMX2-CTNND1H3BSU7 103 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 M0QX08 132 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 NUAK1O60285 661 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 NOBOXO60393 691 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 UGT2B11O75310 529 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CLPXO76031 633 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CCNDBP1O95273 360 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 OR56A5P0C7T3 313 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CD247P20963 164 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 PTPN6P29350 595 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 SLC6A12P48065 614 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 PLA2G16P53816 162 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 PHC1P78364 1004 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 VAC14Q08AM6 782 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 BNIP3Q12983 259 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 RAB33AQ14088 237 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CPSF6Q16630 551 aaKnown RBP eCLIP13.93□□□□□ -0.18
CD48-201ENST00000368045 MEP1AQ16819 746 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CTU2Q2VPK5 515 aaKnown RBP13.93□□□□□ -0.18
CD48-201ENST00000368045 CRTC1Q6UUV9 634 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 USP45Q70EL2 814 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 UBE2R2Q712K3 238 aaPredicted RBP13.93□□□□□ -0.18
CD48-201ENST00000368045 SERPINA11Q86U17 422 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 ZC3H7AQ8IWR0 971 aaKnown RBP13.93□□□□□ -0.18
CD48-201ENST00000368045 OR2AP1Q8NGE2 309 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 NETO1Q8TDF5 533 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CSGALNACT1Q8TDX6 532 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 SCRN2Q96FV2 425 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 FCRL1Q96LA6 429 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 TRIT1Q9H3H1 467 aaKnown RBP13.93□□□□□ -0.18
CD48-201ENST00000368045 TMEFF2Q9UIK5 374 aaPredicted RBP13.93□□□□□ -0.18
CD48-201ENST00000368045 DLGAP4Q9Y2H0 992 aa13.93□□□□□ -0.18
CD48-201ENST00000368045 CPQQ9Y646 472 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms