RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ATXN10Q9UBB4 475 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3DA0A087WVF3 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3IA0A087WXS9 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3EA0A087X179 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3KA0A087X1G2 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3FA6NER0 549 aaPredicted RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3LB9A6J9 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 CDK14O94921 469 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 S100BP04271 92 aaPredicted RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3HP0C7X1 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 AOAHP28039 575 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 CCR7P32248 378 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 CTSCP53634 463 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 HSPA14Q0VDF9 509 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 PFKFB4Q16877 469 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 WSCD2Q2TBF2 565 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 SPATS1Q496A3 300 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 UNC50Q53HI1 259 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3GQ6DHY5 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3CQ6IPX1 549 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 KRT80Q6KB66 452 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 NEK5Q6P3R8 708 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 LAYNQ6UX15 382 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TBC1D3Q8IZP1 549 aaPredicted RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 SYNPOQ8N3V7 929 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 METTL25Q8N6Q8 603 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 PTGR2Q8N8N7 351 aaPredicted RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 RASGEF1AQ8N9B8 481 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 GOLM1Q8NBJ4 401 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TSPAN14Q8NG11 270 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 OR2T34Q8NGX1 318 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 SHDQ96IW2 340 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 ZNF514Q96K75 400 aaPredicted RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 EPHX3Q9H6B9 360 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 LMAN1LQ9HAT1 526 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 TNFRSF12AQ9NP84 129 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 POLMQ9NP87 494 aaPredicted RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 MBNL1Q9NR56 388 aaKnown RBP12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 GID8Q9NWU2 228 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 CD274Q9NZQ7 290 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 FBXL21Q9UKT6 434 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 MYRFQ9Y2G1 1151 aa12.83□□□□□ -0.35
SQSTM1-201ENST00000360718 C19orf67A6NJJ6 358 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 UBFD1O14562 309 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 VEGFDO43915 354 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 RNGTTO60942 597 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 VPS4BO75351 444 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 H6PDO95479 791 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PCCBP05166 539 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 GPX3P22352 226 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 SLC7A2P52569 658 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PPP2CBP62714 309 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PPP2CAP67775 309 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 GK3PQ14409 553 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 SYTL3Q4VX76 610 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 LRRC23Q53EV4 343 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 CLEC6AQ6EIG7 209 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PNCKQ6P2M8 343 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 TMEM220Q6QAJ8 160 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 ADAMTSL4Q6UY14 1074 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 ZBTB49Q6ZSB9 765 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PACRGLQ8N7B6 248 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 ANKFN1Q8N957 763 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 CCT7Q99832 543 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 TMEM79Q9BSE2 394 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 CCM2Q9BSQ5 444 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 RBM38Q9H0Z9 239 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PNPLA3Q9NST1 481 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 EBF1Q9UH73 591 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PCDHGB4Q9UN71 923 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 PCDHGB5Q9Y5G0 923 aa12.83□□□□□ -0.36
SQSTM1-201ENST00000360718 A0A1W2PQU0 124 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 C7orf72A4D263 438 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 PABPN1LA6NDY0 278 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 AQP12BA6NM10 295 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 RAD51BO15315 384 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 HNRNPRO43390 633 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 PAK4O96013 591 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 BMP2P12643 396 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 IL10P22301 178 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 ACSL1P33121 698 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 PRLHRP49683 370 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 NAA20P61599 178 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 BNIP2Q12982 314 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 INPP5AQ14642 412 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 UBXN2BQ14CS0 331 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 PPP4R4Q6NUP7 873 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 CYP2R1Q6VVX0 501 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 RPS27LQ71UM5 84 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 AQP12AQ8IXF9 295 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 SIX5Q8N196 739 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 MIER2Q8N344 545 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 TRPC4APQ8TEL6 797 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 SKA2Q8WVK7 121 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 HMGB4Q8WW32 186 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 SLCO4A1Q96BD0 722 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 OR2AG1Q9H205 316 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 AKTIPQ9H8T0 292 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 LTB4R2Q9NPC1 389 aa12.82□□□□□ -0.36
SQSTM1-201ENST00000360718 NUDT4Q9NZJ9 180 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms