RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SETD3Q86TU7 594 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 VRK3Q8IV63 474 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 NDUFAF2Q8N183 169 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ARFGAP2Q8N6H7 521 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 METTL25Q8N6Q8 603 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PDPRQ8NCN5 879 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 FLVCR1-AS1Q8TAF5 88 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 MVB12AQ96EY5 273 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 THOC1Q96FV9 657 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 DNAJC1Q96KC8 554 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 NRTNQ99748 197 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 DDX50Q9BQ39 737 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 SPATA25Q9BR10 227 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SIKE1Q9BRV8 207 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 C1orf43Q9BWL3 253 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TMEM245Q9H330 911 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 IKZF5Q9H5V7 419 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CNTD2Q9H8S5 307 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RNPEPL1Q9HAU8 725 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TRPV4Q9HBA0 871 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ING3Q9NXR8 418 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CPNE7Q9UBL6 633 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 IPO11Q9UI26 975 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 USP22Q9UPT9 525 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SH2B3Q9UQQ2 575 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 INSL5Q9Y5Q6 135 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SLC4A7Q9Y6M7 1214 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RPS6KL1Q9Y6S9 549 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CAPN7Q9Y6W3 813 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ARHGEF17Q96PE2 2063 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 KRT87PA6NCN2 255 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CFAP73A6NFT4 308 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TMEM202A6NGA9 273 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CAPN8A6NHC0 703 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NPIPB15A6NHN6 443 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 ARHGAP42A6NI28 874 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 H7C0C1 242 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GFYI3L273 518 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LSM1O15116 133 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 TLR5O60602 858 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GLRA3O75311 464 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TUSC2O75896 110 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 KRT36O76013 467 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SEC24DO94855 1032 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 RTN3O95197 1032 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 MATN4O95460 622 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SERPINE1P05121 402 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TFEBP19484 476 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CAPN3P20807 821 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 IMPDH1P20839 514 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HTR1BP28222 390 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RFC2P35250 354 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ATP5OP48047 213 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SERPINB9P50453 376 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ATP4BP51164 291 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RAB10P61026 200 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CDKL1Q00532 357 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SATB1Q01826 763 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GNA12Q03113 381 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GTF2H3Q13889 308 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 KRT81Q14533 505 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MAPRE1Q15691 268 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 MPEG1Q2M385 716 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 VMACQ2NL98 169 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SFT2D3Q587I9 215 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 WASHC2DQ5SRD0 308 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HENMT1Q5T8I9 393 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 HECTD2Q5U5R9 776 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FAM171A1Q5VUB5 890 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MBNL2Q5VZF2 373 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 AP1ARQ63HQ0 302 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TPGS2Q68CL5 300 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SCYL2Q6P3W7 929 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HACD2Q6Y1H2 254 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CCDC149Q6ZUS6 474 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PDSS2Q86YH6 399 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ZNF547Q8IVP9 402 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.26□□□□□ -2.05
VPS54-202ENST00000354504 KIAA2013Q8IYS2 634 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ULK2Q8IYT8 1036 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LRRC43Q8N309 656 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ANKRD42Q8N9B4 389 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 DTX3Q8N9I9 347 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GPR26Q8NDV2 337 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SPPL3Q8TCT6 385 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 BRSK1Q8TDC3 778 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NAT14Q8WUY8 206 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HERVK_113Q902F9 699 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 USP13Q92995 863 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 E2F7Q96AV8 911 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PGBD4Q96DM1 585 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CDKN2AIPNLQ96HQ2 116 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 KCNA7Q96RP8 456 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 DIRC2Q96SL1 478 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FOXB1Q99853 325 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NAT9Q9BTE0 207 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FICDQ9BVA6 458 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PITHD1Q9GZP4 211 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 DERL2Q9GZP9 239 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MAGEH1Q9H213 219 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms