RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 RASGRP3Q8IV61 690 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TP53I13Q8NBR0 393 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CCNYQ8ND76 341 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ACVR1CQ8NER5 493 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PPHLN1Q8NEY8 458 aaKnown RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 OR2T12Q8NG77 320 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 OR4M2Q8NGB6 313 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 FAM162AQ96A26 154 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PTERQ96BW5 349 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 C1orf74Q96LT6 269 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ZSWIM3Q96MP5 696 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 GPR137Q96N19 417 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 COL21A1Q96P44 957 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 KCTD15Q96SI1 283 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LGMNQ99538 433 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 BBS2Q9BXC9 721 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SLC6A16Q9GZN6 736 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SRRQ9GZT4 340 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CLEC4MQ9H2X3 399 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 RIBC2Q9H4K1 309 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TRIM45Q9H8W5 580 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 COL20A1Q9P218 1284 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 KLF2Q9Y5W3 355 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LOC100506127A0A0U1RQW1 187 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 A0A1W2PQ09 198 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MANSC4A6NHS7 340 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 F5H423 210 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 H3BUI4 141 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ARNTLO00327 626 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MYL12BO14950 172 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ANKRD28O15084 1053 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 OGTO15294 1046 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ORC5O43913 435 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 HCN1O60741 890 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CILPO75339 1184 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CRCPO75575 148 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PPM1BO75688 479 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TGM6O95932 706 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 AHSGP02765 367 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 S100A6P06703 90 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 HOXD4P09016 255 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 NPR3P17342 541 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 HOXB8P17481 243 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MYL12AP19105 171 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CYP2B6P20813 491 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 HLA-FP30511 346 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TNFSF8P32971 234 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MAPKAPK2P49137 400 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SCNN1GP51170 649 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 FLI1Q01543 452 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 COX10Q12887 443 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CAMK1Q14012 370 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CSHL1Q14406 222 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 EMC2Q15006 297 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PAFAH1B3Q15102 231 aaKnown RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 GRK1Q15835 563 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 KYAT1Q16773 422 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SYT16Q17RD7 645 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ATP6AP1LQ52LC2 224 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 INTS6LQ5JSJ4 861 aaKnown RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PDZK1Q5T2W1 519 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 KCTD11Q693B1 232 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 TEX261Q6UWH6 196 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LCLAT1Q6UWP7 414 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 CYHR1Q6ZMK1 362 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ANKS3Q6ZW76 656 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 NT5DC4Q86YG4 428 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 OR8H3Q8N146 312 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 ZNF675Q8TD23 568 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 AKAP1Q92667 903 aaKnown RBP eCLIP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PTP4A1Q93096 173 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PYCR2Q96C36 320 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 REPS1Q96D71 796 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 SECISBP2Q96T21 854 aaKnown RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 RAD9AQ99638 391 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 XYLT2Q9H1B5 865 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 PIGUQ9H490 435 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 RANBP3Q9H6Z4 567 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 LIMD1Q9UGP4 676 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 UBQLN2Q9UHD9 624 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 POLG2Q9UHN1 485 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 NDRG4Q9ULP0 352 aaKnown RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 DNAJC15Q9Y5T4 150 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 MAGED1Q9Y5V3 778 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 USP3Q9Y6I4 520 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 U3KQ87 197 aa7.95□□□□□ -1.14
ATG4A-201ENST00000343524 COL2A1P02458 1487 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-201ENST00000343524 DOCK5Q9H7D0 1870 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 CACNA1AO00555 2505 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 CENPFP49454 3210 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 IQCMA0A1B0GVH7 501 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 TNFRSF21O75509 655 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 SCO1O75880 301 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 TPOP07202 933 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 PRR35P0CG20 571 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 KELP23276 732 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 TGFBR1P36897 503 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 CASP2P42575 452 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 EFNA5P52803 228 aa7.94□□□□□ -1.14
ATG4A-201ENST00000343524 TAS2R39P59534 338 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms