RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 XAGE5Q8WWM1 108 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 SUSD3Q96L08 255 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 PRDM8Q9NQV8 689 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 WBP11Q9Y2W2 641 aaKnown RBP12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 HAS3O00219 553 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 ITGBL1O95965 494 aaPredicted RBP12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 MT-ND2P03891 347 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 ALOX5P09917 674 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 HSD17B1P14061 328 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 MATN1P21941 496 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 RXRGP48443 463 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 PURAQ00577 322 aaKnown RBP12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 C2orf80Q0P641 193 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 SELPLGQ14242 412 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 NHSL2Q5HYW2 709 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 SPRYD7Q5W111 196 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 FAM131AQ6UXB0 335 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 CYP4Z1Q86W10 505 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 AUTS2Q8WXX7 1259 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 KAT2AQ92830 837 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 RNFT2Q96EX2 444 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 CORO1BQ9BR76 489 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 KCTD5Q9NXV2 234 aa12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 TUBA8Q9NY65 449 aaPredicted RBP12.15□□□□□ -0.46
SNRNP48-201ENST00000342415 K7ERQ8 282 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 PRAMEF11O60813 436 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 DUSP11O75319 330 aaKnown RBP12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 SPAM1P38567 509 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 EMX2Q04743 252 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 DSC3Q14574 896 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 RNASE12Q5GAN4 147 aaKnown RBP12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 NCCRP1Q6ZVX7 275 aaPredicted RBP12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 CARM1Q86X55 608 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 SIX5Q8N196 739 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 PDPRQ8NCN5 879 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF420Q8TAQ5 688 aaPredicted RBP12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 TSPAN18Q96SJ8 248 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 NLNQ9BYT8 704 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 AGPAT4Q9NRZ5 378 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 ARMC1Q9NVT9 282 aa12.15□□□□□ -0.47
SNRNP48-201ENST00000342415 ASCC3Q8N3C0 2202 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 COL2A1P02458 1487 aaPredicted RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 I6L893 689 aaPredicted RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PAPSS2O95340 614 aaPredicted RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 IMPDH2P12268 514 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 FDXRP22570 491 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CSKP41240 450 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 IL12RB1P42701 662 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PGFP49763 221 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 RELAQ04206 551 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CEP78Q5JTW2 689 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 FAM180BQ6P0A1 224 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 UMODL1-AS1Q8N2C9 162 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PPCDCQ96CD2 204 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 GFM1Q96RP9 751 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 FAIMQ9NVQ4 179 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 TMEM248Q9NWD8 314 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CFAP97Q9P2B7 532 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CLCA2Q9UQC9 943 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 OR6C75A6NL08 312 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 SCAMP1O15126 338 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 LDB2O43679 373 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 BCAS1O75363 584 aaPredicted RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PSIP1O75475 530 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CKBP12277 381 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 TNFRSF1BP20333 461 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 ARNTP27540 789 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 RAB25P57735 213 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 RAPSNQ13702 412 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 SF1Q15637 639 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 TNFAIP8L2Q6P589 184 aaPredicted RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 ARMC8Q8IUR7 673 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 C11orf65Q8NCR3 313 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 OR4K1Q8NGD4 311 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 TP53INP1Q96A56 240 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PYURFQ96I23 114 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 TREX1Q9NSU2 369 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CNOT11Q9UKZ1 510 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 AP3M1Q9Y2T2 418 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CPQQ9Y646 472 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CEP290O15078 2479 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 SLC38A8A6NNN8 435 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 TXNDC8Q6A555 127 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 KDELC1Q6UW63 502 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 DEPDC4Q8N2C3 294 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 CLP1Q92989 425 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 OMA1Q96E52 524 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PKP4Q99569 1192 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 THUMPD1Q9NXG2 353 aaKnown RBP12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PGAP2Q9UHJ9 254 aa12.14□□□□□ -0.47
SNRNP48-201ENST00000342415 PLOD3O60568 738 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 TGFB1P01137 390 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 C1QAP02745 245 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 BUD31P41223 144 aaPredicted RBP12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 ZNF33AQ06730 810 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 FOXM1Q08050 763 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 AAK1Q2M2I8 961 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 ZFP69Q49AA0 526 aa12.13□□□□□ -0.47
SNRNP48-201ENST00000342415 HJURPQ8NCD3 748 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms