RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 VPS29Q9UBQ0 182 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TAL1P17542 331 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 NDUFS1P28331 727 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ARCN1P48444 511 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF280AP59817 542 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ADAM17P78536 824 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 RBBP4Q09028 425 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 KCTD19Q17RG1 926 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ATAD1Q8NBU5 361 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 HMCESQ96FZ2 354 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TBATAQ96M53 351 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 P2RX2Q9UBL9 471 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 HLA-DPB1P04440 258 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 IL1R2P27930 398 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CCR4P51679 360 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 PUDPQ08623 228 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TAF10Q12962 218 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TPRG1LQ5T0D9 272 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ZCCHC12Q6PEW1 402 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 FAM98AQ8NCA5 519 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 PTPRHQ9HD43 1115 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 POLR3BQ9NW08 1133 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 LAG3P18627 525 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CORO1AP31146 461 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MAGEA8P43361 318 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 GSK3BP49841 420 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 XKP51811 444 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 NPTX1Q15818 432 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM199Q8N511 208 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 FCRL4Q96PJ5 515 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 FAM83DQ9H4H8 585 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ARMC1Q9NVT9 282 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CACNA1CQ13936 2221 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MCIDASD6RGH6 385 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ITM2AO43736 263 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 EBLN1P0CF75 366 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 BMP2P12643 396 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 GSTM2P28161 218 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 LEPRP48357 1165 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SERPINA9Q86WD7 417 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 RC3H2Q9HBD1 1191 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 HMX1Q9NP08 348 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CCR8P51685 355 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MBOAT1Q6ZNC8 495 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CLEC20AQ6ZU45 233 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC22A18Q96BI1 424 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SMPD4Q9NXE4 827 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MAFFQ9ULX9 164 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 PCDHGB5Q9Y5G0 923 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 PCDHGA4Q9Y5G9 962 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 HTRA2O43464 458 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 NOBOXO60393 691 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 DLX3O60479 287 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC19A2O60779 497 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 HSD17B1P14061 328 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CREB1P16220 341 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 HTR1EP28566 365 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CDKL4Q5MAI5 379 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 C9orf131Q5VYM1 1079 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 EFCAB3Q8N7B9 438 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CANT1Q8WVQ1 401 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CDH10Q9Y6N8 788 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 U3KQV3 271 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SCN7AQ01118 1682 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 KLHL18O94889 574 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 INMTO95050 263 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 EPCAMP16422 314 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ECHS1P30084 290 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CDH12P55289 794 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 NFKB2Q00653 900 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 DSG2Q14126 1118 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 FRG2Q64ET8 278 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 INO80EQ8NBZ0 244 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 FRG2BQ96QU4 278 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 TTYH1Q9H313 450 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CPNE5Q9HCH3 593 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ARL5CA6NH57 179 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 UBXN7O94888 489 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 NUDT14O95848 222 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SIM2Q14190 667 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM214Q6NUQ4 689 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 C16orf59Q7L2K0 433 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC43A3Q8NBI5 491 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 LMO3Q8TAP4 145 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 TMBIM1Q969X1 311 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ZDHHC7Q9NXF8 308 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 EIF2B4Q9UI10 523 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 B3GNT3Q9Y2A9 372 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 MAGEA6P43360 314 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CHIT1Q13231 466 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ZBTB6Q15916 424 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 NUDT13Q86X67 352 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 WFIKKN2Q8TEU8 576 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SIGLEC10Q96LC7 697 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 RPF2Q9H7B2 306 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM5Q9Y2B1 443 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC16A5O15375 505 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 RFPL1O75677 317 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC35G6P0C7Q6 338 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 MSX2P35548 267 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms