RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SAMHD1Q9Y3Z3 626 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 ZNF99A8MXY4 864 aaPredicted RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 MTX2O75431 263 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 COL6A1P12109 1028 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 HOXC8P31273 242 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 CA5AP35218 305 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 RPIAP49247 311 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 CLCN7P51798 805 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 SMAD3P84022 425 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 CRHR2Q13324 411 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 CHRNA6Q15825 494 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 ANKS3Q6ZW76 656 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 VTCN1Q7Z7D3 282 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 TMEM173Q86WV6 379 aaPredicted RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 C10orf111Q8N326 155 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 DPP10Q8N608 796 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 OR5K1Q8NHB7 308 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 ZFP90Q8TF47 636 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 TADA1Q96BN2 335 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 PANX1Q96RD7 426 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 A0A1B0GVM2 712 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 C2orf78A6NCI8 922 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 TBKBP1A7MCY6 615 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 SLC28A1O00337 649 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 KPNA4O00629 521 aaPredicted RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 SEC14L2O76054 403 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 TACR1P25103 407 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 GSTM2P28161 218 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 IDUAP35475 653 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 NCS1P62166 190 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 MAD2L1Q13257 205 aaPredicted RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 IRAK1BP1Q5VVH5 260 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ZBTB2Q8N680 514 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 NDNFQ8TB73 568 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 HPS1Q92902 700 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 DACH2Q96NX9 599 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 MBOAT4Q96T53 435 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 DPH2Q9BQC3 489 aaPredicted RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 TUBA1CQ9BQE3 449 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ROGDIQ9GZN7 287 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ABCB10Q9NRK6 738 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 C1orf109Q9NX04 203 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 IL17CQ9P0M4 197 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ITGB1BP2Q9UKP3 347 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 TRIM64CA6NLI5 447 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 TAPBPO15533 448 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 RECQL5O94762 991 aaPredicted RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 WDR47O94967 919 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 SCELO95171 688 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 NPPAP01160 153 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 C1QCP02747 245 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 HIST1H2AGP0C0S8 130 aaPredicted RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 CKBP12277 381 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 HIST1H2ADP20671 130 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 TGFBR1P36897 503 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 SLC11A1P49279 550 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 SEPHS1P49903 392 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 CYP4F2P78329 520 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ARF5P84085 180 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 BCL2L1Q07817 233 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 DCP2Q8IU60 420 aaKnown RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 RBFAQ8N0V3 343 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 DBF4BQ8NFT6 615 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 MYO19Q96H55 970 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 HIST1H2AHQ96KK5 128 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 HIST1H2AJQ99878 128 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 H2AFJQ9BTM1 129 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 MIR1-1HGQ9H1L0 117 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 SACM1LQ9NTJ5 587 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 GPRC5BQ9NZH0 403 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 CD84Q9UIB8 345 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 GNPTGQ9UJJ9 305 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 FAM32AQ9Y421 112 aaKnown RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 ZNF451Q9Y4E5 1061 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 OR6C75A6NL08 312 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 MANBAO00462 879 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ATF6P18850 670 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 CTGFP29279 349 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ZXDBP98169 803 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 EMX1Q04741 257 aaPredicted RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 RING1Q06587 406 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 GPR17Q13304 367 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 OR8J3Q8NGG0 315 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 TRUB1Q8WWH5 349 aaKnown RBP12.35□□□□□ -0.43
LIG1-201ENST00000263274 EID2BQ96D98 161 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 CLIP3Q96DZ5 547 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 HERC2P3Q9BVR0 1158 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ASPSCR1Q9BZE9 553 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 CD244Q9BZW8 370 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 RNF38Q9H0F5 515 aa12.35□□□□□ -0.43
LIG1-201ENST00000263274 ILVBLA1L0T0 632 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 ARNTLO00327 626 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 IFRD1O00458 451 aaPredicted RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 SYN3O14994 580 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 SEPT4O43236 478 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 SMAD6O43541 496 aaKnown RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 STC2O76061 302 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 PDYNP01213 254 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 IL6P05231 212 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms