RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HSF5Q4G112 596 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CCDC157Q569K6 752 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 PGAM4Q8N0Y7 254 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 LIX1Q8N485 282 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 DLG3Q92796 817 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 KCNK12Q9HB15 430 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 MRPS30Q9NP92 439 aaKnown RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 VPS29Q9UBQ0 182 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 TAC3Q9UHF0 121 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 RNF11Q9Y3C5 154 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 FADS3Q9Y5Q0 445 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 SNX13Q9Y5W8 968 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 COPG1Q9Y678 874 aaKnown RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 C9JVG2 144 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 KCNJ13O60928 360 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PPP2R1BP30154 601 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 CTSCP53634 463 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 DLG1Q12959 904 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 NFE2L1Q14494 772 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 HERC3Q15034 1050 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PUS10Q3MIT2 529 aaKnown RBP11.29□□□□□ -0.6
VPS4A-201ENST00000254950 CDKL4Q5MAI5 379 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 C9orf64Q5T6V5 341 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 C6orf89Q6UWU4 347 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 RRM2BQ7LG56 351 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 CHCHD4Q8N4Q1 142 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PDLIM5Q96HC4 596 aaKnown RBP11.29□□□□□ -0.6
VPS4A-201ENST00000254950 HPS4Q9NQG7 708 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 NDOR1Q9UHB4 597 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PDE10AQ9Y233 779 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 MICAL3Q7RTP6 2002 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 FAM170BA6NMN3 283 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 SDHDO14521 159 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 DYRK3O43781 588 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 ZNF682O95780 498 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 FCGR1AP12314 374 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 CDH3P22223 829 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 CCR7P32248 378 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 XIAPP98170 497 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 RPA4Q13156 261 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 TJAP1Q5JTD0 557 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PNCKQ6P2M8 343 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 MBOAT1Q6ZNC8 495 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 CLEC4FQ8N1N0 589 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 AVL9Q8NBF6 648 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 SLC38A3Q99624 504 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 TPSD1Q9BZJ3 242 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 RHBGQ9H310 441 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 TRPS1Q9UHF7 1281 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 ANK1P16157 1881 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 AOC1P19801 751 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 ZXDBP98169 803 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PHKG1Q16816 387 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 TBCELQ5QJ74 424 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 SYVN1Q86TM6 617 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 MAGED4Q96JG8 741 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 ATOH8Q96SQ7 321 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 ATXN10Q9UBB4 475 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 SCOCQ9UIL1 159 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 PCTPQ9UKL6 214 aa11.29□□□□□ -0.6
VPS4A-201ENST00000254950 EIF4E1BA6NMX2 242 aaKnown RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 MYO1GB0I1T2 1018 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 CASQ2O14958 399 aaPredicted RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 AOAHP28039 575 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 DHPSP49366 369 aaPredicted RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 CDK3Q00526 305 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 C2orf80Q0P641 193 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 BNIP2Q12982 314 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 FAM98BQ52LJ0 330 aaKnown RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 LRRC23Q53EV4 343 aaPredicted RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 WDR45BQ5MNZ6 344 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 TRIM40Q6P9F5 258 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 SUSD1Q6UWL2 747 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 TTLQ8NG68 377 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 SLC5A11Q8WWX8 675 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 DNAJC9Q8WXX5 260 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GDF15Q99988 308 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ARHGEF3Q9NR81 526 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 RHPN2P1A8MT19 583 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ARHGEF15O94989 841 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 OPRD1P41143 372 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 MAGEA12P43365 314 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 EIF2B5Q13144 721 aaKnown RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 UNC5DQ6UXZ4 953 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GCNT7Q6ZNI0 430 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 RINLQ6ZS11 566 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 NEK10Q6ZWH5 1172 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GALNT4Q8N4A0 578 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 DEFB119Q8N690 84 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 PPM1MQ96MI6 270 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ING2Q9H160 280 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 GPR34Q9UPC5 381 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 DTNAQ9Y4J8 743 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 ERAL1O75616 437 aaKnown RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 EGFP01133 1207 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 SLC35G6P0C7Q6 338 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 PPIBP23284 216 aaKnown RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 MAPK12P53778 367 aa11.28□□□□□ -0.6
VPS4A-201ENST00000254950 MRPS22P82650 360 aaKnown RBP11.28□□□□□ -0.6
VPS4A-201ENST00000254950 RPL6Q02878 288 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms