RNA–Protein interactions for RNA: ENST00000641570.1

PHGDH-220, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,036 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-220ENST00000641570 SMARCC1Q92922 1105 aaPredicted RBP16.76■□□□□ 0.27
PHGDH-220ENST00000641570 CHMP4AQ9BY43 222 aa16.76■□□□□ 0.27
PHGDH-220ENST00000641570 BCL9O00512 1426 aa16.73■□□□□ 0.27
PHGDH-220ENST00000641570 HMGB2P26583 209 aaKnown RBP16.73■□□□□ 0.27
PHGDH-220ENST00000641570 FMNL2Q96PY5 1086 aa16.73■□□□□ 0.27
PHGDH-220ENST00000641570 ZNF521Q96K83 1311 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 FANCIQ9NVI1 1328 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 PIGBQ92521 554 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 TSR2Q969E8 191 aaKnown RBP16.72■□□□□ 0.27
PHGDH-220ENST00000641570 RBM42Q9BTD8 480 aaKnown RBP16.72■□□□□ 0.27
PHGDH-220ENST00000641570 BCL11BQ9C0K0 894 aaPredicted RBP16.72■□□□□ 0.27
PHGDH-220ENST00000641570 MBIPQ9NS73 344 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 MIS18AQ9NYP9 233 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 SHANK3Q9BYB0 1731 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 MRC1P22897 1456 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 DLG5Q8TDM6 1919 aa16.72■□□□□ 0.27
PHGDH-220ENST00000641570 TRIM37O94972 964 aa16.71■□□□□ 0.27
PHGDH-220ENST00000641570 SLFN5Q08AF3 891 aa16.71■□□□□ 0.27
PHGDH-220ENST00000641570 ZNF790Q6PG37 636 aa16.71■□□□□ 0.27
PHGDH-220ENST00000641570 DOT1LQ8TEK3 1739 aa16.7■□□□□ 0.26
PHGDH-220ENST00000641570 CHL1O00533 1208 aa16.7■□□□□ 0.26
PHGDH-220ENST00000641570 NPM2Q86SE8 214 aaKnown RBP16.7■□□□□ 0.26
PHGDH-220ENST00000641570 PTCD1O75127 700 aaKnown RBP16.69■□□□□ 0.26
PHGDH-220ENST00000641570 SLC39A6Q13433 755 aa16.69■□□□□ 0.26
PHGDH-220ENST00000641570 CDCA7LQ96GN5 454 aa16.69■□□□□ 0.26
PHGDH-220ENST00000641570 SCN11AQ9UI33 1791 aa16.69■□□□□ 0.26
PHGDH-220ENST00000641570 PALLDQ8WX93 1383 aa16.68■□□□□ 0.26
PHGDH-220ENST00000641570 KCNQ2O43526 872 aa16.68■□□□□ 0.26
PHGDH-220ENST00000641570 APBA3O96018 575 aa16.67■□□□□ 0.26
PHGDH-220ENST00000641570 CT47B1P0C2W7 299 aaPredicted RBP16.67■□□□□ 0.26
PHGDH-220ENST00000641570 ZNF853P0CG23 659 aa16.67■□□□□ 0.26
PHGDH-220ENST00000641570 TEX13AQ9BXU3 409 aaPredicted RBP16.67■□□□□ 0.26
PHGDH-220ENST00000641570 SOS1Q07889 1333 aaPredicted RBP16.67■□□□□ 0.26
PHGDH-220ENST00000641570 SNRPA1P09661 255 aaKnown RBP16.66■□□□□ 0.26
PHGDH-220ENST00000641570 BAG6P46379 1132 aa16.66■□□□□ 0.26
PHGDH-220ENST00000641570 EXOSC9Q06265 439 aaKnown RBP16.66■□□□□ 0.26
PHGDH-220ENST00000641570 TWISTNBQ3B726 338 aaPredicted RBP16.66■□□□□ 0.26
PHGDH-220ENST00000641570 STK31Q9BXU1 1019 aa16.66■□□□□ 0.26
PHGDH-220ENST00000641570 ASAP1Q9ULH1 1129 aa16.66■□□□□ 0.26
PHGDH-220ENST00000641570 BRWD3Q6RI45 1802 aa16.66■□□□□ 0.26
PHGDH-220ENST00000641570 NHSQ6T4R5 1651 aa16.65■□□□□ 0.26
PHGDH-220ENST00000641570 ADAMTS7Q9UKP4 1686 aa16.65■□□□□ 0.26
PHGDH-220ENST00000641570 STARD3NLO95772 234 aa16.65■□□□□ 0.26
PHGDH-220ENST00000641570 DUSP27Q5VZP5 1158 aa16.65■□□□□ 0.26
PHGDH-220ENST00000641570 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
PHGDH-220ENST00000641570 KAT6BQ8WYB5 2073 aa16.65■□□□□ 0.26
PHGDH-220ENST00000641570 ELL2O00472 640 aaPredicted RBP16.64■□□□□ 0.25
PHGDH-220ENST00000641570 HOXB7P09629 217 aa16.64■□□□□ 0.25
PHGDH-220ENST00000641570 CANXP27824 592 aaKnown RBP16.64■□□□□ 0.25
PHGDH-220ENST00000641570 ATP6V1AP38606 617 aa16.64■□□□□ 0.25
PHGDH-220ENST00000641570 EIF4A1P60842 406 aaKnown RBP16.64■□□□□ 0.25
PHGDH-220ENST00000641570 HDGFL1Q5TGJ6 251 aa16.64■□□□□ 0.25
PHGDH-220ENST00000641570 SPINK5Q9NQ38 1064 aaPredicted RBP16.64■□□□□ 0.25
PHGDH-220ENST00000641570 TOGARAM1Q9Y4F4 1720 aa16.64■□□□□ 0.25
PHGDH-220ENST00000641570 EIF2S2P20042 333 aaKnown RBP16.63■□□□□ 0.25
PHGDH-220ENST00000641570 CCDC30Q5VVM6 783 aa16.63■□□□□ 0.25
PHGDH-220ENST00000641570 ILDR2Q71H61 639 aa16.63■□□□□ 0.25
PHGDH-220ENST00000641570 CCDC125Q86Z20 511 aa16.63■□□□□ 0.25
PHGDH-220ENST00000641570 VSIG10Q8N0Z9 540 aa16.63■□□□□ 0.25
PHGDH-220ENST00000641570 ZNF428Q96B54 188 aa16.63■□□□□ 0.25
PHGDH-220ENST00000641570 ZNF496Q96IT1 587 aaPredicted RBP16.63■□□□□ 0.25
PHGDH-220ENST00000641570 CCNL1Q9UK58 526 aaPredicted RBP16.63■□□□□ 0.25
PHGDH-220ENST00000641570 HEG1Q9ULI3 1381 aa16.63■□□□□ 0.25
PHGDH-220ENST00000641570 LOC102724428A0A0B4J2F2 783 aa16.62■□□□□ 0.25
PHGDH-220ENST00000641570 SIK1P57059 783 aa16.62■□□□□ 0.25
PHGDH-220ENST00000641570 KCNQ3O43525 872 aa16.61■□□□□ 0.25
PHGDH-220ENST00000641570 SLC27A3Q5K4L6 730 aa16.61■□□□□ 0.25
PHGDH-220ENST00000641570 GIGYF1O75420 1035 aaPredicted RBP16.59■□□□□ 0.25
PHGDH-220ENST00000641570 TRMT2AQ8IZ69 625 aaKnown RBP16.59■□□□□ 0.25
PHGDH-220ENST00000641570 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.59■□□□□ 0.25
PHGDH-220ENST00000641570 C8orf58Q8NAV2 365 aa16.59■□□□□ 0.25
PHGDH-220ENST00000641570 NECTIN2Q92692 538 aa16.59■□□□□ 0.25
PHGDH-220ENST00000641570 SMC4Q9NTJ3 1288 aa16.59■□□□□ 0.25
PHGDH-220ENST00000641570 ZNF330Q9Y3S2 320 aaPredicted RBP16.59■□□□□ 0.25
PHGDH-220ENST00000641570 ITGB4P16144 1822 aa16.59■□□□□ 0.25
PHGDH-220ENST00000641570 VIRMAQ69YN4 1812 aaKnown RBP16.59■□□□□ 0.25
PHGDH-220ENST00000641570 AK7Q96M32 723 aa16.58■□□□□ 0.24
PHGDH-220ENST00000641570 RCAN3Q9UKA8 241 aa16.58■□□□□ 0.24
PHGDH-220ENST00000641570 KDM3BQ7LBC6 1761 aa16.58■□□□□ 0.24
PHGDH-220ENST00000641570 SIPA1L3O60292 1781 aaPredicted RBP16.57■□□□□ 0.24
PHGDH-220ENST00000641570 PLSCR1O15162 318 aa16.57■□□□□ 0.24
PHGDH-220ENST00000641570 KRT24Q2M2I5 525 aa16.57■□□□□ 0.24
PHGDH-220ENST00000641570 DNAJC10Q8IXB1 793 aa16.57■□□□□ 0.24
PHGDH-220ENST00000641570 ARXQ96QS3 562 aa16.57■□□□□ 0.24
PHGDH-220ENST00000641570 BTAF1O14981 1849 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 PAPPAQ13219 1627 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 KCPQ6ZWJ8 1503 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 ERBB4Q15303 1308 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 SOCS7O14512 581 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 ALDH1L2Q3SY69 923 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 PTF1AQ7RTS3 328 aa16.56■□□□□ 0.24
PHGDH-220ENST00000641570 DBF4Q9UBU7 674 aaPredicted RBP16.56■□□□□ 0.24
PHGDH-220ENST00000641570 KIF16BQ96L93 1317 aa16.55■□□□□ 0.24
PHGDH-220ENST00000641570 TSPYL6Q8N831 410 aa16.55■□□□□ 0.24
PHGDH-220ENST00000641570 IPO8O15397 1037 aaKnown RBP16.54■□□□□ 0.24
PHGDH-220ENST00000641570 VAMP4O75379 141 aa16.54■□□□□ 0.24
PHGDH-220ENST00000641570 DDX58O95786 925 aaKnown RBP16.54■□□□□ 0.24
PHGDH-220ENST00000641570 TXNRD1Q16881 649 aa16.54■□□□□ 0.24
PHGDH-220ENST00000641570 HYPKQ9NX55 129 aa16.54■□□□□ 0.24
PHGDH-220ENST00000641570 MYL6BP14649 208 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms