RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	HDGFL1	Q5TGJ6	251 aa		10.39	□□□□□ -0.75
PNKP-231	ENST00000640501	IL17RE	Q8NFR9	667 aa		10.39	□□□□□ -0.75
PNKP-231	ENST00000640501	FLII	Q13045	1269 aa		10.38	□□□□□ -0.75
PNKP-231	ENST00000640501	NLRP2	Q9NX02	1062 aa		10.38	□□□□□ -0.75
PNKP-231	ENST00000640501	MIS18A	Q9NYP9	233 aa		10.38	□□□□□ -0.75
PNKP-231	ENST00000640501	CRYBG1	Q9Y4K1	1723 aa		10.38	□□□□□ -0.75
PNKP-231	ENST00000640501	RGPD5	Q99666	1765 aa		10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	RNMT	O43148	476 aa	Known RBP	10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	GNAI2	P04899	355 aa		10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	ZC3H6	P61129	1189 aa	Known RBP	10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	ANKRD45	Q5TZF3	282 aa		10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	ANKRD44	Q8N8A2	993 aa		10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	LRRC59	Q96AG4	307 aa	Known RBP	10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	PARP4	Q9UKK3	1724 aa	Known RBP	10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	ADAMTS7	Q9UKP4	1686 aa		10.37	□□□□□ -0.75
PNKP-231	ENST00000640501	RGS12	O14924	1447 aa		10.36	□□□□□ -0.75
PNKP-231	ENST00000640501	SLC4A10	Q6U841	1118 aa		10.36	□□□□□ -0.75
PNKP-231	ENST00000640501	IFNL2	Q8IZJ0	200 aa		10.36	□□□□□ -0.75
PNKP-231	ENST00000640501	SLAIN2	Q9P270	581 aa		10.36	□□□□□ -0.75
PNKP-231	ENST00000640501	DBF4	Q9UBU7	674 aa	Predicted RBP	10.36	□□□□□ -0.75
PNKP-231	ENST00000640501	COL18A1	P39060	1754 aa		10.36	□□□□□ -0.75
PNKP-231	ENST00000640501	SIPA1L3	O60292	1781 aa	Predicted RBP	10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	SCN11A	Q9UI33	1791 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	MSH5	O43196	834 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	PLEKHG5	O94827	1062 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	DDX58	O95786	925 aa	Known RBP	10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	EIF4A1	P60842	406 aa	Known RBP	10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	KRT24	Q2M2I5	525 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	BMP2KL	Q5H9B9	411 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	CASC1	Q6TDU7	716 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	BRINP3	Q76B58	766 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	SKAP1	Q86WV1	359 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	DCTPP1	Q9H773	170 aa		10.35	□□□□□ -0.75
PNKP-231	ENST00000640501	PKD1L3	Q7Z443	1732 aa		10.34	□□□□□ -0.75
PNKP-231	ENST00000640501	MPRIP	Q6WCQ1	1025 aa		10.34	□□□□□ -0.75
PNKP-231	ENST00000640501	LNPK	Q9C0E8	428 aa		10.34	□□□□□ -0.75
PNKP-231	ENST00000640501	HYPK	Q9NX55	129 aa		10.34	□□□□□ -0.75
PNKP-231	ENST00000640501	SOS2	Q07890	1332 aa	Predicted RBP	10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	NHSL1	Q5SYE7	1610 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	KDM4F	A0A1W2PPD8	638 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	CEP85	Q6P2H3	762 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	TTC5	Q8N0Z6	440 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	DCAF5	Q96JK2	942 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	SRCIN1	Q9C0H9	1055 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	C1orf115	Q9H7X2	142 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	PRDM11	Q9NQV5	511 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	AXIN2	Q9Y2T1	843 aa		10.33	□□□□□ -0.76
PNKP-231	ENST00000640501	UBTFL1	P0CB47	393 aa	Predicted RBP	10.32	□□□□□ -0.76
PNKP-231	ENST00000640501	EIF2S2	P20042	333 aa	Known RBP	10.32	□□□□□ -0.76
PNKP-231	ENST00000640501	RTL5	Q5HYW3	569 aa	Predicted RBP	10.32	□□□□□ -0.76
PNKP-231	ENST00000640501	LGR6	Q9HBX8	967 aa		10.32	□□□□□ -0.76
PNKP-231	ENST00000640501	ATP10D	Q9P241	1426 aa		10.32	□□□□□ -0.76
PNKP-231	ENST00000640501	WDR17	Q8IZU2	1322 aa		10.32	□□□□□ -0.76
PNKP-231	ENST00000640501	PHKG2	P15735	406 aa		10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	HSP90AB4P	Q58FF6	505 aa		10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	MEIS3	Q99687	375 aa		10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	SLC52A2	Q9HAB3	445 aa		10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	PCDH11X	Q9BZA7	1347 aa		10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	PCDH11Y	Q9BZA8	1340 aa		10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.31	□□□□□ -0.76
PNKP-231	ENST00000640501	ABCA3	Q99758	1704 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	CDC45	O75419	566 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	ALDH1L1	O75891	902 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	TOM1L2	Q6ZVM7	507 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	G2E3	Q7L622	706 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	DNAAF4	Q8WXU2	420 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	TBC1D32	Q96NH3	1257 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	USP35	Q9P2H5	1018 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	MRC1	P22897	1456 aa		10.3	□□□□□ -0.76
PNKP-231	ENST00000640501	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	HEG1	Q9ULI3	1381 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501		F6X3S4	739 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	RAB11FIP3	O75154	756 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	GIGYF1	O75420	1035 aa	Predicted RBP	10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	EVA1C	P58658	441 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	NEXN	Q0ZGT2	675 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	ZNF790	Q6PG37	636 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	SIRT2	Q8IXJ6	389 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	NECTIN2	Q92692	538 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	C22orf23	Q9BZE7	217 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	LRRCC1	Q9C099	1032 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	CHPF2	Q9P2E5	772 aa		10.29	□□□□□ -0.76
PNKP-231	ENST00000640501	CABP4	P57796	275 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	ATP8B2	P98198	1209 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	CHRNA2	Q15822	529 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	KSR2	Q6VAB6	950 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	CABLES1	Q8TDN4	633 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	DDX17	Q92841	729 aa	Known RBP	10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	FMNL2	Q96PY5	1086 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	DDX21	Q9NR30	783 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	MEGF6	O75095	1541 aa		10.28	□□□□□ -0.76
PNKP-231	ENST00000640501	LAMB4	A4D0S4	1761 aa		10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	ERVV-2	B6SEH9	535 aa		10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	SNRPA1	P09661	255 aa	Known RBP	10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	MFAP1	P55081	439 aa	Known RBP	10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	ZCRB1	Q8TBF4	217 aa	Known RBP	10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	CARD10	Q9BWT7	1032 aa		10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	COL5A2	P05997	1499 aa	Predicted RBP	10.27	□□□□□ -0.77
PNKP-231	ENST00000640501	ERBB4	Q15303	1308 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms