RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ACEP12821 1306 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 FAM83GA6ND36 823 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 SSFA2P28290 1259 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 ZNF804AQ7Z570 1209 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 MYO9BQ13459 2157 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 SLC4A8Q2Y0W8 1093 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 HOOK1Q9UJC3 728 aaKnown RBP6□□□□□ -1.45
SCN1A-218ENST00000640036 PDZRN3Q9UPQ7 1066 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 E9PSI1 815 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 PABPC4Q13310 644 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-218ENST00000640036 USHBP1Q8N6Y0 703 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 KRT18P05783 430 aaKnown RBP6□□□□□ -1.45
SCN1A-218ENST00000640036 SNRPA1P09661 255 aaKnown RBP6□□□□□ -1.45
SCN1A-218ENST00000640036 FKBP4Q02790 459 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-218ENST00000640036 TAF7Q15545 349 aaPredicted RBP6□□□□□ -1.45
SCN1A-218ENST00000640036 MSL1Q68DK7 614 aa6□□□□□ -1.45
SCN1A-218ENST00000640036 EPS15P42566 896 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 NCBP1Q09161 790 aaKnown RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 PDE3AQ14432 1141 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 CCDC96Q2M329 555 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 VSIG10Q8N0Z9 540 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 GCP02774 474 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 JCADQ9P266 1359 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 TTC21BQ7Z4L5 1316 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 HSPA1LP34931 641 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 TNFAIP1Q13829 316 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 ANKRD20A12PQ8NF67 263 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 PCDH11XQ9BZA7 1347 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 PCDH11YQ9BZA8 1340 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 ZNF335Q9H4Z2 1342 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 HMGB1P1B2RPK0 211 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 HIP1O00291 1037 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 SURF6O75683 361 aaKnown RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 DALRD3Q5D0E6 543 aaKnown RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 UNC5CLQ8IV45 518 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 MCTP1Q6DN14 999 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 HYPKQ9NX55 129 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 CDK13Q14004 1512 aaKnown RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 ZFYVE16Q7Z3T8 1539 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 PPIP5K2O43314 1243 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 PSDA5PKW4 1024 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 DPP8Q6V1X1 898 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 DZIP3Q86Y13 1208 aaKnown RBP5.99□□□□□ -1.45
SCN1A-218ENST00000640036 NUTM1Q86Y26 1132 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 SRCIN1Q9C0H9 1055 aa5.99□□□□□ -1.45
SCN1A-218ENST00000640036 IQCA1LA6NCM1 817 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 IDH1O75874 414 aaKnown RBP5.98□□□□□ -1.45
SCN1A-218ENST00000640036 MAP3K12Q12852 859 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 ARMC9Q7Z3E5 817 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 NEO1Q92859 1461 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 HOXD10P28358 340 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 ANKRD45Q5TZF3 282 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 GIGYF1O75420 1035 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-218ENST00000640036 ZFYVE27Q5T4F4 411 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 C2orf69Q8N8R5 385 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 UTP14AQ9BVJ6 771 aaKnown RBP5.98□□□□□ -1.45
SCN1A-218ENST00000640036 SEC63Q9UGP8 760 aaKnown RBP5.98□□□□□ -1.45
SCN1A-218ENST00000640036 TXLNAP40222 546 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 CCDC70Q6NSX1 233 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 FSD1Q9BTV5 496 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 RUSC2Q8N2Y8 1516 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 TAF12Q16514 161 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 UBAC1Q9BSL1 405 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 SPATA31A6Q5VVP1 1343 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 MYBBP1AQ9BQG0 1328 aaKnown RBP5.98□□□□□ -1.45
SCN1A-218ENST00000640036 TMEM94Q12767 1356 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 F8W031 263 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-218ENST00000640036 ECE1P42892 770 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 DRC7Q8IY82 874 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 ZBTB3Q9H5J0 574 aa5.98□□□□□ -1.45
SCN1A-218ENST00000640036 NINLQ9Y2I6 1382 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 SKIV2LQ15477 1246 aaKnown RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 RIMBP2O15034 1052 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 TNPO1Q92973 898 aaKnown RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 CWC25Q9NXE8 425 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 LRRC9Q6ZRR7 1453 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 APAF1O14727 1248 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 PRIM1P49642 420 aaKnown RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 R3HDM1Q15032 1099 aaKnown RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 ST18O60284 1047 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 LDHAL6AQ6ZMR3 332 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 C2CD5Q86YS7 1000 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 NPHP4O75161 1426 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 TPM1P09493 284 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 DDX19BQ9UMR2 479 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 ZBTB7AO95365 584 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 MSNP26038 577 aaKnown RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 IRX6P78412 446 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 SYAP1Q96A49 352 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-218ENST00000640036 TRPM2O94759 1503 aa5.97□□□□□ -1.45
SCN1A-218ENST00000640036 NEBLO76041 1014 aa5.96□□□□□ -1.45
SCN1A-218ENST00000640036 PLCG2P16885 1265 aa5.96□□□□□ -1.45
SCN1A-218ENST00000640036 RDXP35241 583 aaKnown RBP5.96□□□□□ -1.45
SCN1A-218ENST00000640036 IRX3P78415 501 aaPredicted RBP5.96□□□□□ -1.45
SCN1A-218ENST00000640036 SIL1Q9H173 461 aa5.96□□□□□ -1.45
SCN1A-218ENST00000640036 SH2D4AQ9H788 454 aa5.96□□□□□ -1.45
SCN1A-218ENST00000640036 CCT4P50991 539 aaKnown RBP5.96□□□□□ -1.45
SCN1A-218ENST00000640036 CNTROBQ8N137 903 aa5.96□□□□□ -1.45
SCN1A-218ENST00000640036 PCMTD1Q96MG8 357 aaPredicted RBP5.96□□□□□ -1.45
SCN1A-218ENST00000640036 ANKRD2Q9GZV1 360 aa5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms