RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
CLN3-248ENST00000636355 IL2RBP14784 551 aa13.52□□□□□ -0.25
CLN3-248ENST00000636355 PHKG2P15735 406 aa13.52□□□□□ -0.25
CLN3-248ENST00000636355 FTSJ3Q8IY81 847 aaKnown RBP13.52□□□□□ -0.25
CLN3-248ENST00000636355 CDCA7Q9BWT1 371 aaPredicted RBP13.52□□□□□ -0.25
CLN3-248ENST00000636355 CHMP4BQ9H444 224 aaKnown RBP13.52□□□□□ -0.25
CLN3-248ENST00000636355 PTPRCP08575 1304 aa13.52□□□□□ -0.25
CLN3-248ENST00000636355 GLI3P10071 1580 aa13.51□□□□□ -0.25
CLN3-248ENST00000636355 HEG1Q9ULI3 1381 aa13.51□□□□□ -0.25
CLN3-248ENST00000636355 TRIM27P14373 513 aa13.51□□□□□ -0.25
CLN3-248ENST00000636355 C20orf194Q5TEA3 1177 aa13.51□□□□□ -0.25
CLN3-248ENST00000636355 DZIP1LQ8IYY4 767 aaKnown RBP13.51□□□□□ -0.25
CLN3-248ENST00000636355 TSPYL6Q8N831 410 aa13.51□□□□□ -0.25
CLN3-248ENST00000636355 C8orf58Q8NAV2 365 aa13.51□□□□□ -0.25
CLN3-248ENST00000636355 FRAT1Q92837 279 aaPredicted RBP13.51□□□□□ -0.25
CLN3-248ENST00000636355 ABCC4O15439 1325 aa13.5□□□□□ -0.25
CLN3-248ENST00000636355 EVA1CP58658 441 aa13.5□□□□□ -0.25
CLN3-248ENST00000636355 MVPQ14764 893 aaKnown RBP13.5□□□□□ -0.25
CLN3-248ENST00000636355 MRPL50Q8N5N7 158 aaKnown RBP13.5□□□□□ -0.25
CLN3-248ENST00000636355 BCL2L13Q9BXK5 485 aa13.5□□□□□ -0.25
CLN3-248ENST00000636355 API5Q9BZZ5 524 aaKnown RBP13.5□□□□□ -0.25
CLN3-248ENST00000636355 BTG4Q9NY30 223 aa13.5□□□□□ -0.25
CLN3-248ENST00000636355 THRAP3Q9Y2W1 955 aaKnown RBP13.5□□□□□ -0.25
CLN3-248ENST00000636355 C5P01031 1676 aa13.5□□□□□ -0.25
CLN3-248ENST00000636355 NKX1-1Q15270 411 aaPredicted RBP13.49□□□□□ -0.25
CLN3-248ENST00000636355 SLC52A2Q9HAB3 445 aa13.49□□□□□ -0.25
CLN3-248ENST00000636355 DDX19BQ9UMR2 479 aa13.49□□□□□ -0.25
CLN3-248ENST00000636355 RGS12O14924 1447 aa13.48□□□□□ -0.25
CLN3-248ENST00000636355 ITGB4P16144 1822 aa13.48□□□□□ -0.25
CLN3-248ENST00000636355 CYP27B1O15528 508 aa13.48□□□□□ -0.25
CLN3-248ENST00000636355 CCDC30Q5VVM6 783 aa13.48□□□□□ -0.25
CLN3-248ENST00000636355 LARP1Q6PKG0 1096 aaKnown RBP13.48□□□□□ -0.25
CLN3-248ENST00000636355 ZCRB1Q8TBF4 217 aaKnown RBP13.48□□□□□ -0.25
CLN3-248ENST00000636355 CLUAP1Q96AJ1 413 aa13.48□□□□□ -0.25
CLN3-248ENST00000636355 CICQ96RK0 1608 aaPredicted RBP13.48□□□□□ -0.25
CLN3-248ENST00000636355 BTBD11A6QL63 1104 aa13.47□□□□□ -0.25
CLN3-248ENST00000636355 MPRIPQ6WCQ1 1025 aa13.47□□□□□ -0.25
CLN3-248ENST00000636355 STK31Q9BXU1 1019 aa13.47□□□□□ -0.25
CLN3-248ENST00000636355 STRN4Q9NRL3 753 aa13.47□□□□□ -0.25
CLN3-248ENST00000636355 ERVV-2B6SEH9 535 aa13.46□□□□□ -0.25
CLN3-248ENST00000636355 EIF4A1P60842 406 aaKnown RBP13.46□□□□□ -0.25
CLN3-248ENST00000636355 B4GALNT3Q6L9W6 998 aa13.46□□□□□ -0.25
CLN3-248ENST00000636355 POTEAQ6S8J7 498 aa13.46□□□□□ -0.25
CLN3-248ENST00000636355 PANK1Q8TE04 598 aa13.46□□□□□ -0.25
CLN3-248ENST00000636355 LGR6Q9HBX8 967 aa13.46□□□□□ -0.25
CLN3-248ENST00000636355 NOB1Q9ULX3 412 aaKnown RBP13.46□□□□□ -0.25
CLN3-248ENST00000636355 DOT1LQ8TEK3 1739 aa13.46□□□□□ -0.25
CLN3-248ENST00000636355 THSD7AQ9UPZ6 1657 aa13.45□□□□□ -0.26
CLN3-248ENST00000636355 RLBP1P12271 317 aa13.45□□□□□ -0.26
CLN3-248ENST00000636355 CENPQQ7L2Z9 268 aaPredicted RBP13.45□□□□□ -0.26
CLN3-248ENST00000636355 SPATA31A1Q5TZJ5 1347 aa13.44□□□□□ -0.26
CLN3-248ENST00000636355 KDM2BQ8NHM5 1336 aa13.44□□□□□ -0.26
CLN3-248ENST00000636355 COG6Q9Y2V7 657 aa13.44□□□□□ -0.26
CLN3-248ENST00000636355 IBTKQ9P2D0 1353 aaPredicted RBP13.44□□□□□ -0.26
CLN3-248ENST00000636355 KCPQ6ZWJ8 1503 aa13.44□□□□□ -0.26
CLN3-248ENST00000636355 SPATA31A5Q5VU36 1347 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 SPATA31A7Q8IWB4 1347 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 ELL2O00472 640 aaPredicted RBP13.43□□□□□ -0.26
CLN3-248ENST00000636355 KRT24Q2M2I5 525 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 HDGFL1Q5TGJ6 251 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 ZNF790Q6PG37 636 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 BARGINQ6ZT62 677 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 ZNF831Q5JPB2 1677 aa13.43□□□□□ -0.26
CLN3-248ENST00000636355 ITPRIPQ8IWB1 547 aa13.42□□□□□ -0.26
CLN3-248ENST00000636355 MIS18AQ9NYP9 233 aa13.42□□□□□ -0.26
CLN3-248ENST00000636355 BCL9LQ86UU0 1499 aa13.42□□□□□ -0.26
CLN3-248ENST00000636355 ERBB4Q15303 1308 aa13.41□□□□□ -0.26
CLN3-248ENST00000636355 INTS3Q68E01 1043 aaKnown RBP13.41□□□□□ -0.26
CLN3-248ENST00000636355 GIGYF1O75420 1035 aaPredicted RBP13.4□□□□□ -0.26
CLN3-248ENST00000636355 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
CLN3-248ENST00000636355 CABP4P57796 275 aa13.4□□□□□ -0.26
CLN3-248ENST00000636355 TTC5Q8N0Z6 440 aa13.4□□□□□ -0.26
CLN3-248ENST00000636355 FNBP4Q8N3X1 1017 aaPredicted RBP13.4□□□□□ -0.26
CLN3-248ENST00000636355 TMEM57Q8N5G2 664 aa13.4□□□□□ -0.26
CLN3-248ENST00000636355 ATP10DQ9P241 1426 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 ADAMTS2O95450 1211 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 CCT4P50991 539 aaKnown RBP13.39□□□□□ -0.27
CLN3-248ENST00000636355 FLIIQ13045 1269 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 VPS72Q15906 364 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 UNC5CLQ8IV45 518 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 FMNL2Q96PY5 1086 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 ZBTB40Q9NUA8 1239 aa13.39□□□□□ -0.27
CLN3-248ENST00000636355 DBF4Q9UBU7 674 aaPredicted RBP13.39□□□□□ -0.27
CLN3-248ENST00000636355 TNNQ9UQP3 1299 aa13.38□□□□□ -0.27
CLN3-248ENST00000636355 BCL9O00512 1426 aa13.38□□□□□ -0.27
CLN3-248ENST00000636355 ARFGEF2Q9Y6D5 1785 aa13.37□□□□□ -0.27
CLN3-248ENST00000636355 HDAC1Q13547 482 aaPredicted RBP13.37□□□□□ -0.27
CLN3-248ENST00000636355 NFATC2IPQ8NCF5 419 aa13.37□□□□□ -0.27
CLN3-248ENST00000636355 HYPKQ9NX55 129 aa13.37□□□□□ -0.27
CLN3-248ENST00000636355 NUP188Q5SRE5 1749 aa13.36□□□□□ -0.27
CLN3-248ENST00000636355 NUTM2BA6NNL0 878 aaPredicted RBP13.36□□□□□ -0.27
CLN3-248ENST00000636355 NUTM2EB1AL46 878 aaPredicted RBP13.36□□□□□ -0.27
CLN3-248ENST00000636355 EXOC5O00471 708 aa13.36□□□□□ -0.27
CLN3-248ENST00000636355 SNRPA1P09661 255 aaKnown RBP13.36□□□□□ -0.27
CLN3-248ENST00000636355 NUTM2AQ8IVF1 878 aaPredicted RBP13.36□□□□□ -0.27
CLN3-248ENST00000636355 NHSQ6T4R5 1651 aa13.36□□□□□ -0.27
CLN3-248ENST00000636355 RREB1Q92766 1687 aa13.36□□□□□ -0.27
CLN3-248ENST00000636355 FKBP5Q13451 457 aaPredicted RBP13.35□□□□□ -0.27
CLN3-248ENST00000636355 RWDD1Q9H446 243 aaPredicted RBP13.35□□□□□ -0.27
CLN3-248ENST00000636355 DDX21Q9NR30 783 aaKnown RBP eCLIP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms