RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 CAPN15O75808 1086 aa12.46□□□□□ -0.42
PDLIM5-223ENST00000627587 AEBP1Q8IUX7 1158 aa12.46□□□□□ -0.42
PDLIM5-223ENST00000627587 PNNQ9H307 717 aaKnown RBP12.46□□□□□ -0.42
PDLIM5-223ENST00000627587 RTL1A6NKG5 1358 aa12.45□□□□□ -0.42
PDLIM5-223ENST00000627587 KDRP35968 1356 aa12.45□□□□□ -0.42
PDLIM5-223ENST00000627587 FKBP8Q14318 412 aa12.44□□□□□ -0.42
PDLIM5-223ENST00000627587 POLD1P28340 1107 aa12.44□□□□□ -0.42
PDLIM5-223ENST00000627587 AMPHP49418 695 aa12.44□□□□□ -0.42
PDLIM5-223ENST00000627587 KAT6BQ8WYB5 2073 aa12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 BTAF1O14981 1849 aa12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 IGSF1Q8N6C5 1336 aa12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 NEFLP07196 543 aa12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 DDX54Q8TDD1 881 aaKnown RBP12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 FAM208AQ9UK61 1670 aaKnown RBP12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 MAPK8IP3Q9UPT6 1336 aa12.43□□□□□ -0.42
PDLIM5-223ENST00000627587 SULT6B1Q6IMI4 303 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 WDR63Q8IWG1 891 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 ZNF784Q8NCA9 323 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 AKT1S1Q96B36 256 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 EYA1Q99502 592 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 PAPPAQ13219 1627 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 E9PSI1 815 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 NEFMP07197 916 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 IRX6P78412 446 aaPredicted RBP12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 LRRC4BQ9NT99 713 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 RCAN3Q9UKA8 241 aa12.42□□□□□ -0.42
PDLIM5-223ENST00000627587 CHD4Q14839 1912 aa12.41□□□□□ -0.42
PDLIM5-223ENST00000627587 ZNF827Q17R98 1081 aa12.41□□□□□ -0.42
PDLIM5-223ENST00000627587 ZCRB1Q8TBF4 217 aaKnown RBP12.41□□□□□ -0.42
PDLIM5-223ENST00000627587 QSER1Q2KHR3 1735 aa12.4□□□□□ -0.42
PDLIM5-223ENST00000627587 RIPK4P57078 832 aa12.4□□□□□ -0.42
PDLIM5-223ENST00000627587 NFE2L2Q16236 605 aa12.4□□□□□ -0.42
PDLIM5-223ENST00000627587 LTV1Q96GA3 475 aaPredicted RBP12.4□□□□□ -0.42
PDLIM5-223ENST00000627587 NCAPD2Q15021 1401 aa12.4□□□□□ -0.42
PDLIM5-223ENST00000627587 TFCP2L1Q9NZI6 479 aa12.4□□□□□ -0.42
PDLIM5-223ENST00000627587 PRIM1P49642 420 aaKnown RBP12.39□□□□□ -0.43
PDLIM5-223ENST00000627587 GPR162Q16538 588 aa12.39□□□□□ -0.43
PDLIM5-223ENST00000627587 SYTL4Q96C24 671 aaPredicted RBP12.38□□□□□ -0.43
PDLIM5-223ENST00000627587 RRP1P56182 461 aaKnown RBP12.37□□□□□ -0.43
PDLIM5-223ENST00000627587 POTEHQ6S545 545 aa12.37□□□□□ -0.43
PDLIM5-223ENST00000627587 IL16Q14005 1332 aa12.37□□□□□ -0.43
PDLIM5-223ENST00000627587 PNPLA7Q6ZV29 1317 aa12.37□□□□□ -0.43
PDLIM5-223ENST00000627587 VIRMAQ69YN4 1812 aaKnown RBP12.37□□□□□ -0.43
PDLIM5-223ENST00000627587 COL24A1Q17RW2 1714 aa12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 NBPF6Q5VWK0 638 aa12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 NBPF4Q96M43 638 aa12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 THUMPD2Q9BTF0 503 aaKnown RBP12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 GRIN3BO60391 1043 aa12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 FLAD1Q8NFF5 587 aa12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 RAPGEF4Q8WZA2 1011 aa12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 CCNL1Q9UK58 526 aaPredicted RBP12.36□□□□□ -0.43
PDLIM5-223ENST00000627587 FANCIQ9NVI1 1328 aa12.35□□□□□ -0.43
PDLIM5-223ENST00000627587 TATP17735 454 aaPredicted RBP12.35□□□□□ -0.43
PDLIM5-223ENST00000627587 USHBP1Q8N6Y0 703 aa12.35□□□□□ -0.43
PDLIM5-223ENST00000627587 TSR2Q969E8 191 aaKnown RBP12.35□□□□□ -0.43
PDLIM5-223ENST00000627587 C1QTNF8P60827 252 aa12.34□□□□□ -0.43
PDLIM5-223ENST00000627587 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
PDLIM5-223ENST00000627587 LY75O60449 1722 aa12.34□□□□□ -0.43
PDLIM5-223ENST00000627587 SLC4A2P04920 1241 aa12.34□□□□□ -0.43
PDLIM5-223ENST00000627587 ZNF853P0CG23 659 aa12.34□□□□□ -0.43
PDLIM5-223ENST00000627587 KLHL34Q8N239 644 aa12.34□□□□□ -0.43
PDLIM5-223ENST00000627587 PLIN1O60240 522 aa12.33□□□□□ -0.44
PDLIM5-223ENST00000627587 KCNA4P22459 653 aa12.33□□□□□ -0.44
PDLIM5-223ENST00000627587 DCTN1Q14203 1278 aa12.33□□□□□ -0.44
PDLIM5-223ENST00000627587 MYH16Q9H6N6 1097 aa12.32□□□□□ -0.44
PDLIM5-223ENST00000627587 SMARCC1Q92922 1105 aaPredicted RBP12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 DOT1LQ8TEK3 1739 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 MEGF6O75095 1541 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 PCDH11XQ9BZA7 1347 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 PCDH11YQ9BZA8 1340 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 BCAR3O75815 825 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 LMOD3Q0VAK6 560 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 ERICH6BQ5W0A0 696 aa12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 COL23A1Q86Y22 540 aaPredicted RBP12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 PELP1Q8IZL8 1130 aaKnown RBP12.31□□□□□ -0.44
PDLIM5-223ENST00000627587 KCNQ4P56696 695 aa12.3□□□□□ -0.44
PDLIM5-223ENST00000627587 EXOSC9Q06265 439 aaKnown RBP12.3□□□□□ -0.44
PDLIM5-223ENST00000627587 C20orf194Q5TEA3 1177 aa12.3□□□□□ -0.44
PDLIM5-223ENST00000627587 CD2APQ9Y5K6 639 aa12.3□□□□□ -0.44
PDLIM5-223ENST00000627587 GIGYF1O75420 1035 aaPredicted RBP12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 RARSP54136 660 aaKnown RBP12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 MCM10Q7L590 875 aa12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 IFT57Q9NWB7 429 aa12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 SHANK3Q9BYB0 1731 aa12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 ADAMTS7Q9UKP4 1686 aa12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 CALD1Q05682 793 aaKnown RBP12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 TUBGCP6Q96RT7 1819 aa12.29□□□□□ -0.44
PDLIM5-223ENST00000627587 PKD1L3Q7Z443 1732 aa12.28□□□□□ -0.44
PDLIM5-223ENST00000627587 NLGN2Q8NFZ4 835 aa12.28□□□□□ -0.44
PDLIM5-223ENST00000627587 CFAP44Q96MT7 982 aa12.28□□□□□ -0.44
PDLIM5-223ENST00000627587 MBIPQ9NS73 344 aa12.28□□□□□ -0.44
PDLIM5-223ENST00000627587 SIPA1L3O60292 1781 aaPredicted RBP12.27□□□□□ -0.44
PDLIM5-223ENST00000627587 GAS2L2Q8NHY3 880 aa12.27□□□□□ -0.44
PDLIM5-223ENST00000627587 NKX1-1Q15270 411 aaPredicted RBP12.27□□□□□ -0.45
PDLIM5-223ENST00000627587 MPRIPQ6WCQ1 1025 aa12.27□□□□□ -0.45
PDLIM5-223ENST00000627587 SPG7Q9UQ90 795 aa12.27□□□□□ -0.45
PDLIM5-223ENST00000627587 PALLDQ8WX93 1383 aa12.26□□□□□ -0.45
PDLIM5-223ENST00000627587 GNAI1P63096 354 aa12.26□□□□□ -0.45
PDLIM5-223ENST00000627587 IL17REQ8NFR9 667 aa12.26□□□□□ -0.45
PDLIM5-223ENST00000627587 EXOC6Q8TAG9 804 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms