RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 MEIS3Q99687 375 aa24.7■■□□□ 1.54
CHRNA4-209ENST00000627000 RNMTO43148 476 aaKnown RBP24.69■■□□□ 1.54
CHRNA4-209ENST00000627000 EIF4A1P60842 406 aaKnown RBP24.69■■□□□ 1.54
CHRNA4-209ENST00000627000 TEFQ10587 303 aa24.69■■□□□ 1.54
CHRNA4-209ENST00000627000 FLIIQ13045 1269 aa24.69■■□□□ 1.54
CHRNA4-209ENST00000627000 GCC1Q96CN9 775 aa24.69■■□□□ 1.54
CHRNA4-209ENST00000627000 NLRP2Q9NX02 1062 aa24.69■■□□□ 1.54
CHRNA4-209ENST00000627000 ANKRD45Q5TZF3 282 aa24.68■■□□□ 1.54
CHRNA4-209ENST00000627000 ATP10DQ9P241 1426 aa24.68■■□□□ 1.54
CHRNA4-209ENST00000627000 SOS1Q07889 1333 aaPredicted RBP24.67■■□□□ 1.54
CHRNA4-209ENST00000627000 CACNA1FO60840 1977 aa24.67■■□□□ 1.54
CHRNA4-209ENST00000627000 BTBD11A6QL63 1104 aa24.66■■□□□ 1.54
CHRNA4-209ENST00000627000 HDGFL1Q5TGJ6 251 aa24.66■■□□□ 1.54
CHRNA4-209ENST00000627000 FKBP5Q13451 457 aaPredicted RBP24.66■■□□□ 1.54
CHRNA4-209ENST00000627000 SLAIN2Q9P270 581 aa24.64■■□□□ 1.54
CHRNA4-209ENST00000627000 EIF2S2P20042 333 aaKnown RBP24.64■■□□□ 1.53
CHRNA4-209ENST00000627000 ANKRD44Q8N8A2 993 aa24.64■■□□□ 1.53
CHRNA4-209ENST00000627000 CSB-PGBD3P0DP91 1061 aa24.63■■□□□ 1.53
CHRNA4-209ENST00000627000 CCT4P50991 539 aaKnown RBP24.63■■□□□ 1.53
CHRNA4-209ENST00000627000 CEP85Q6P2H3 762 aa24.63■■□□□ 1.53
CHRNA4-209ENST00000627000 DDRGK1Q96HY6 314 aa24.63■■□□□ 1.53
CHRNA4-209ENST00000627000 RAPGEF4Q8WZA2 1011 aa24.62■■□□□ 1.53
CHRNA4-209ENST00000627000 PHAXQ9H814 394 aaKnown RBP24.62■■□□□ 1.53
CHRNA4-209ENST00000627000 MEGF6O75095 1541 aa24.61■■□□□ 1.53
CHRNA4-209ENST00000627000 OVOS2A0A0G2JMS6 1433 aa24.6■■□□□ 1.53
CHRNA4-209ENST00000627000 RPAP2Q8IXW5 612 aaPredicted RBP24.6■■□□□ 1.53
CHRNA4-209ENST00000627000 DCTPP1Q9H773 170 aa24.6■■□□□ 1.53
CHRNA4-209ENST00000627000 SIPA1L3O60292 1781 aaPredicted RBP24.6■■□□□ 1.53
CHRNA4-209ENST00000627000 CPDO75976 1380 aa24.59■■□□□ 1.53
CHRNA4-209ENST00000627000 ADAMTS7Q9UKP4 1686 aa24.59■■□□□ 1.53
CHRNA4-209ENST00000627000 TATP17735 454 aaPredicted RBP24.59■■□□□ 1.53
CHRNA4-209ENST00000627000 SOS2Q07890 1332 aaPredicted RBP24.58■■□□□ 1.53
CHRNA4-209ENST00000627000 ABCC6O95255 1503 aa24.57■■□□□ 1.52
CHRNA4-209ENST00000627000 HOXB7P09629 217 aa24.57■■□□□ 1.52
CHRNA4-209ENST00000627000 SLC4A3P48751 1232 aa24.57■■□□□ 1.52
CHRNA4-209ENST00000627000 CHPF2Q9P2E5 772 aa24.57■■□□□ 1.52
CHRNA4-209ENST00000627000 BCL11AQ9H165 835 aa24.57■■□□□ 1.52
CHRNA4-209ENST00000627000 N4BP2Q86UW6 1770 aaPredicted RBP24.55■■□□□ 1.52
CHRNA4-209ENST00000627000 ANXA1P04083 346 aa24.55■■□□□ 1.52
CHRNA4-209ENST00000627000 KDM6AO15550 1401 aaPredicted RBP24.55■■□□□ 1.52
CHRNA4-209ENST00000627000 SCN11AQ9UI33 1791 aa24.54■■□□□ 1.52
CHRNA4-209ENST00000627000 PHKG2P15735 406 aa24.54■■□□□ 1.52
CHRNA4-209ENST00000627000 PRAMEF22A3QJZ6 481 aa24.54■■□□□ 1.52
CHRNA4-209ENST00000627000 SPG7Q9UQ90 795 aa24.53■■□□□ 1.52
CHRNA4-209ENST00000627000 GIGYF1O75420 1035 aaPredicted RBP24.52■■□□□ 1.52
CHRNA4-209ENST00000627000 GNAI2P04899 355 aa24.52■■□□□ 1.52
CHRNA4-209ENST00000627000 PRDM11Q9NQV5 511 aa24.52■■□□□ 1.52
CHRNA4-209ENST00000627000 HEG1Q9ULI3 1381 aa24.52■■□□□ 1.52
CHRNA4-209ENST00000627000 PXDNLA1KZ92 1463 aa24.52■■□□□ 1.52
CHRNA4-209ENST00000627000 C16orf71Q8IYS4 520 aaPredicted RBP24.51■■□□□ 1.51
CHRNA4-209ENST00000627000 UPF2Q9HAU5 1272 aaKnown RBP24.51■■□□□ 1.51
CHRNA4-209ENST00000627000 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.51■■□□□ 1.51
CHRNA4-209ENST00000627000 APBB1O00213 710 aa24.5■■□□□ 1.51
CHRNA4-209ENST00000627000 BMP2KLQ5H9B9 411 aa24.5■■□□□ 1.51
CHRNA4-209ENST00000627000 TBC1D32Q96NH3 1257 aa24.5■■□□□ 1.51
CHRNA4-209ENST00000627000 SLC39A6Q13433 755 aa24.5■■□□□ 1.51
CHRNA4-209ENST00000627000 CYP27B1O15528 508 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 GNAI3P08754 354 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 MFAP1P55081 439 aaKnown RBP24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 IFNL2Q8IZJ0 200 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 SLC52A2Q9HAB3 445 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 PKD1L3Q7Z443 1732 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 ABCA3Q99758 1704 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 SMARCA5O60264 1052 aaPredicted RBP24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 USP44Q9H0E7 712 aa24.49■■□□□ 1.51
CHRNA4-209ENST00000627000 PROSER3Q2NL68 480 aa24.48■■□□□ 1.51
CHRNA4-209ENST00000627000 PLEKHM2Q8IWE5 1019 aa24.48■■□□□ 1.51
CHRNA4-209ENST00000627000 NFATC2IPQ8NCF5 419 aa24.48■■□□□ 1.51
CHRNA4-209ENST00000627000 HMMRO75330 724 aa24.47■■□□□ 1.51
CHRNA4-209ENST00000627000 PI4KAP2A4QPH2 592 aa24.47■■□□□ 1.51
CHRNA4-209ENST00000627000 PI4KAP1Q8N8J0 262 aa24.47■■□□□ 1.51
CHRNA4-209ENST00000627000 OTUD7AQ8TE49 926 aaPredicted RBP24.47■■□□□ 1.51
CHRNA4-209ENST00000627000 CHMP4AQ9BY43 222 aa24.47■■□□□ 1.51
CHRNA4-209ENST00000627000 DBF4Q9UBU7 674 aaPredicted RBP24.47■■□□□ 1.51
CHRNA4-209ENST00000627000 LRRFIP2Q9Y608 721 aaKnown RBP24.46■■□□□ 1.51
CHRNA4-209ENST00000627000 NHSL1Q5SYE7 1610 aa24.46■■□□□ 1.51
CHRNA4-209ENST00000627000 ZNF790Q6PG37 636 aa24.46■■□□□ 1.51
CHRNA4-209ENST00000627000 WDR17Q8IZU2 1322 aa24.45■■□□□ 1.51
CHRNA4-209ENST00000627000 PNMA6EA0A0J9YXQ4 647 aa24.45■■□□□ 1.5
CHRNA4-209ENST00000627000 DNAAF4Q8WXU2 420 aa24.45■■□□□ 1.5
CHRNA4-209ENST00000627000 SRCIN1Q9C0H9 1055 aa24.45■■□□□ 1.5
CHRNA4-209ENST00000627000 DAXXQ9UER7 740 aaPredicted RBP24.45■■□□□ 1.5
CHRNA4-209ENST00000627000 TOM1L2Q6ZVM7 507 aa24.44■■□□□ 1.5
CHRNA4-209ENST00000627000 ADCY9O60503 1353 aa24.44■■□□□ 1.5
CHRNA4-209ENST00000627000 COL5A2P05997 1499 aaPredicted RBP24.44■■□□□ 1.5
CHRNA4-209ENST00000627000 C5P01031 1676 aa24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 GSPT1P15170 499 aaKnown RBP24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 NBR1Q14596 966 aa24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 BEND3Q5T5X7 828 aa24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 UBTFL1P0CB47 393 aaPredicted RBP24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 ATP8B2P98198 1209 aa24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 EXOC6BQ9Y2D4 811 aa24.43■■□□□ 1.5
CHRNA4-209ENST00000627000 DCAF5Q96JK2 942 aa24.42■■□□□ 1.5
CHRNA4-209ENST00000627000 PLEKHG2Q9H7P9 1386 aa24.42■■□□□ 1.5
CHRNA4-209ENST00000627000 C22orf23Q9BZE7 217 aa24.42■■□□□ 1.5
CHRNA4-209ENST00000627000 MRC1P22897 1456 aa24.4■■□□□ 1.5
CHRNA4-209ENST00000627000 PARP4Q9UKK3 1724 aaKnown RBP24.39■■□□□ 1.5
CHRNA4-209ENST00000627000 NBPF7P0C2Y1 421 aaPredicted RBP24.39■■□□□ 1.5
CHRNA4-209ENST00000627000 TTC22Q5TAA0 569 aa24.39■■□□□ 1.5
CHRNA4-209ENST00000627000 ZNF496Q96IT1 587 aaPredicted RBP24.39■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms