RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 BTBD11A6QL63 1104 aa20.55■□□□□ 0.88
LDB3-208ENST00000623007 KRT24Q2M2I5 525 aa20.54■□□□□ 0.88
LDB3-208ENST00000623007 DDX17Q92841 729 aaKnown RBP20.54■□□□□ 0.88
LDB3-208ENST00000623007 N4BP2Q86UW6 1770 aaPredicted RBP20.53■□□□□ 0.88
LDB3-208ENST00000623007 EIF4A1P60842 406 aaKnown RBP20.53■□□□□ 0.88
LDB3-208ENST00000623007 HDGFL1Q5TGJ6 251 aa20.53■□□□□ 0.88
LDB3-208ENST00000623007 IFNL2Q8IZJ0 200 aa20.53■□□□□ 0.88
LDB3-208ENST00000623007 PKD1L3Q7Z443 1732 aa20.52■□□□□ 0.88
LDB3-208ENST00000623007 DDRGK1Q96HY6 314 aa20.52■□□□□ 0.88
LDB3-208ENST00000623007 PRDM11Q9NQV5 511 aa20.52■□□□□ 0.88
LDB3-208ENST00000623007 SIPA1L3O60292 1781 aaPredicted RBP20.52■□□□□ 0.88
LDB3-208ENST00000623007 EIF5BO60841 1220 aaKnown RBP20.51■□□□□ 0.87
LDB3-208ENST00000623007 FLIIQ13045 1269 aa20.51■□□□□ 0.87
LDB3-208ENST00000623007 PARP4Q9UKK3 1724 aaKnown RBP20.51■□□□□ 0.87
LDB3-208ENST00000623007 NUCB1Q02818 461 aa20.51■□□□□ 0.87
LDB3-208ENST00000623007 C8orf34Q49A92 452 aa20.51■□□□□ 0.87
LDB3-208ENST00000623007 LGR6Q9HBX8 967 aa20.51■□□□□ 0.87
LDB3-208ENST00000623007 SCN11AQ9UI33 1791 aa20.5■□□□□ 0.87
LDB3-208ENST00000623007 ABCA3Q99758 1704 aa20.5■□□□□ 0.87
LDB3-208ENST00000623007 WDR17Q8IZU2 1322 aa20.5■□□□□ 0.87
LDB3-208ENST00000623007 HMMRO75330 724 aa20.5■□□□□ 0.87
LDB3-208ENST00000623007 GNAI3P08754 354 aa20.5■□□□□ 0.87
LDB3-208ENST00000623007 MPRIPQ6WCQ1 1025 aa20.49■□□□□ 0.87
LDB3-208ENST00000623007 DCAF5Q96JK2 942 aa20.49■□□□□ 0.87
LDB3-208ENST00000623007 IPO9Q96P70 1041 aaKnown RBP20.49■□□□□ 0.87
LDB3-208ENST00000623007 PLEKHG5O94827 1062 aa20.48■□□□□ 0.87
LDB3-208ENST00000623007 FKBP5Q13451 457 aaPredicted RBP20.48■□□□□ 0.87
LDB3-208ENST00000623007 CABLES1Q8TDN4 633 aa20.48■□□□□ 0.87
LDB3-208ENST00000623007 ZBTB47Q9UFB7 747 aaPredicted RBP20.48■□□□□ 0.87
LDB3-208ENST00000623007 HEG1Q9ULI3 1381 aa20.48■□□□□ 0.87
LDB3-208ENST00000623007 PHKG2P15735 406 aa20.48■□□□□ 0.87
LDB3-208ENST00000623007 ANKRD44Q8N8A2 993 aa20.48■□□□□ 0.87
LDB3-208ENST00000623007 MRC1P22897 1456 aa20.47■□□□□ 0.87
LDB3-208ENST00000623007 CHD1LQ86WJ1 897 aa20.47■□□□□ 0.87
LDB3-208ENST00000623007 UPF2Q9HAU5 1272 aaKnown RBP20.47■□□□□ 0.87
LDB3-208ENST00000623007 DBF4Q9UBU7 674 aaPredicted RBP20.47■□□□□ 0.87
LDB3-208ENST00000623007 HDAC5Q9UQL6 1122 aa20.47■□□□□ 0.87
LDB3-208ENST00000623007 COL5A2P05997 1499 aaPredicted RBP20.46■□□□□ 0.87
LDB3-208ENST00000623007 MEGF6O75095 1541 aa20.45■□□□□ 0.86
LDB3-208ENST00000623007 AHDC1Q5TGY3 1603 aaPredicted RBP20.45■□□□□ 0.86
LDB3-208ENST00000623007 CHRNA2Q15822 529 aa20.45■□□□□ 0.86
LDB3-208ENST00000623007 ERICH6Q7L0X2 663 aa20.45■□□□□ 0.86
LDB3-208ENST00000623007 CARD10Q9BWT7 1032 aa20.45■□□□□ 0.86
LDB3-208ENST00000623007 SLC52A2Q9HAB3 445 aa20.45■□□□□ 0.86
LDB3-208ENST00000623007 DCTPP1Q9H773 170 aa20.44■□□□□ 0.86
LDB3-208ENST00000623007 PCDH11XQ9BZA7 1347 aa20.44■□□□□ 0.86
LDB3-208ENST00000623007 PCDH11YQ9BZA8 1340 aa20.44■□□□□ 0.86
LDB3-208ENST00000623007 GNAI2P04899 355 aa20.43■□□□□ 0.86
LDB3-208ENST00000623007 SKAP1Q86WV1 359 aa20.43■□□□□ 0.86
LDB3-208ENST00000623007 CERKQ8TCT0 537 aa20.43■□□□□ 0.86
LDB3-208ENST00000623007 GIGYF1O75420 1035 aaPredicted RBP20.42■□□□□ 0.86
LDB3-208ENST00000623007 SLC4A10Q6U841 1118 aa20.42■□□□□ 0.86
LDB3-208ENST00000623007 TOM1L2Q6ZVM7 507 aa20.42■□□□□ 0.86
LDB3-208ENST00000623007 G2E3Q7L622 706 aa20.42■□□□□ 0.86
LDB3-208ENST00000623007 HYPKQ9NX55 129 aa20.42■□□□□ 0.86
LDB3-208ENST00000623007 IBTKQ9P2D0 1353 aaPredicted RBP20.42■□□□□ 0.86
LDB3-208ENST00000623007 ATP10DQ9P241 1426 aa20.42■□□□□ 0.86
LDB3-208ENST00000623007 CEP85Q6P2H3 762 aa20.41■□□□□ 0.86
LDB3-208ENST00000623007 KDM6AO15550 1401 aaPredicted RBP20.4■□□□□ 0.86
LDB3-208ENST00000623007 COL22A1Q8NFW1 1626 aaPredicted RBP20.4■□□□□ 0.86
LDB3-208ENST00000623007 ZNF790Q6PG37 636 aa20.4■□□□□ 0.86
LDB3-208ENST00000623007 DDX58O95786 925 aaKnown RBP20.39■□□□□ 0.86
LDB3-208ENST00000623007 ANKRD45Q5TZF3 282 aa20.39■□□□□ 0.86
LDB3-208ENST00000623007 SIRT2Q8IXJ6 389 aa20.39■□□□□ 0.86
LDB3-208ENST00000623007 IL2RBP14784 551 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 EVA1CP58658 441 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 TTC5Q8N0Z6 440 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 MEIS3Q99687 375 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 SRCIN1Q9C0H9 1055 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 C1orf115Q9H7X2 142 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 COL14A1Q05707 1796 aaKnown RBP20.38■□□□□ 0.85
LDB3-208ENST00000623007 EIF2S2P20042 333 aaKnown RBP20.38■□□□□ 0.85
LDB3-208ENST00000623007 BMP2KLQ5H9B9 411 aa20.38■□□□□ 0.85
LDB3-208ENST00000623007 ZCRB1Q8TBF4 217 aaKnown RBP20.38■□□□□ 0.85
LDB3-208ENST00000623007 NOP58Q9Y2X3 529 aaKnown RBP20.38■□□□□ 0.85
LDB3-208ENST00000623007 ROBO1Q9Y6N7 1651 aa20.37■□□□□ 0.85
LDB3-208ENST00000623007 ERVV-2B6SEH9 535 aa20.37■□□□□ 0.85
LDB3-208ENST00000623007 CHPF2Q9P2E5 772 aa20.37■□□□□ 0.85
LDB3-208ENST00000623007 F6X3S4 739 aa20.36■□□□□ 0.85
LDB3-208ENST00000623007 NKX1-1Q15270 411 aaPredicted RBP20.36■□□□□ 0.85
LDB3-208ENST00000623007 DNAAF4Q8WXU2 420 aa20.36■□□□□ 0.85
LDB3-208ENST00000623007 DDX21Q9NR30 783 aaKnown RBP eCLIP20.36■□□□□ 0.85
LDB3-208ENST00000623007 LTBP4Q8N2S1 1624 aa20.36■□□□□ 0.85
LDB3-208ENST00000623007 ALDH1L1O75891 902 aa20.35■□□□□ 0.85
LDB3-208ENST00000623007 FMNL2Q96PY5 1086 aa20.35■□□□□ 0.85
LDB3-208ENST00000623007 LNPKQ9C0E8 428 aa20.35■□□□□ 0.85
LDB3-208ENST00000623007 ERBB4Q15303 1308 aa20.35■□□□□ 0.85
LDB3-208ENST00000623007 CYP27B1O15528 508 aa20.35■□□□□ 0.85
LDB3-208ENST00000623007 CABP4P57796 275 aa20.35■□□□□ 0.85
LDB3-208ENST00000623007 NPM2Q86SE8 214 aaKnown RBP20.35■□□□□ 0.85
LDB3-208ENST00000623007 SNRPA1P09661 255 aaKnown RBP20.34■□□□□ 0.85
LDB3-208ENST00000623007 UBTFL1P0CB47 393 aaPredicted RBP20.34■□□□□ 0.85
LDB3-208ENST00000623007 NFATC2IPQ8NCF5 419 aa20.33■□□□□ 0.85
LDB3-208ENST00000623007 NECTIN2Q92692 538 aa20.33■□□□□ 0.85
LDB3-208ENST00000623007 KCNQ3O43525 872 aa20.32■□□□□ 0.84
LDB3-208ENST00000623007 ATP8B2P98198 1209 aa20.32■□□□□ 0.84
LDB3-208ENST00000623007 KSR2Q6VAB6 950 aa20.32■□□□□ 0.84
LDB3-208ENST00000623007 DAXXQ9UER7 740 aaPredicted RBP20.32■□□□□ 0.84
LDB3-208ENST00000623007 PHAXQ9H814 394 aaKnown RBP20.32■□□□□ 0.84
LDB3-208ENST00000623007 LAMB4A4D0S4 1761 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms