RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 IL1RAPL2Q9NP60 686 aa17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC96Q2M329 555 aa17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC57Q2TAC2 916 aa17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 PSMD1Q99460 953 aa17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 SSFA2P28290 1259 aa17.77■□□□□ 0.43
PDLIM2-220ENST00000622226 GDPD2Q9HCC8 539 aa17.77■□□□□ 0.43
PDLIM2-220ENST00000622226 CNTLNQ9NXG0 1405 aa17.77■□□□□ 0.43
PDLIM2-220ENST00000622226 DRC1Q96MC2 740 aa17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 ZNF830Q96NB3 372 aaPredicted RBP17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 ERC1Q8IUD2 1116 aa17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 TMC6Q7Z403 805 aa17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 TDRD12Q587J7 1177 aaKnown RBP17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 ANO10Q9NW15 660 aa17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 ADCY5O95622 1261 aa17.76■□□□□ 0.43
PDLIM2-220ENST00000622226 BMS1Q14692 1282 aaKnown RBP17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 LARP1Q6PKG0 1096 aaKnown RBP17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 AACSQ86V21 672 aa17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 CEP57Q86XR8 500 aa17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 MICALL1Q8N3F8 863 aa17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 PRPF4BQ13523 1007 aaKnown RBP17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 SPECC1LQ69YQ0 1117 aa17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 USP5P45974 858 aa17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 PDE3AQ14432 1141 aa17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 LARP6Q9BRS8 491 aaKnown RBP17.75■□□□□ 0.43
PDLIM2-220ENST00000622226 GIGYF2Q6Y7W6 1299 aaKnown RBP17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 BIN1O00499 593 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 SNW1Q13573 536 aaKnown RBP17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 FANCD2Q9BXW9 1451 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 PRKAR2BP31323 418 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 CETN2P41208 172 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 CEP135Q66GS9 1140 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 ISM2Q6H9L7 571 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 RBM27Q9P2N5 1060 aaKnown RBP17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 WIZO95785 1651 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 CCDC6Q16204 474 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 HOOK3Q86VS8 718 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 ZSCAN31Q96LW9 406 aaPredicted RBP17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 UBA5Q9GZZ9 404 aa17.74■□□□□ 0.43
PDLIM2-220ENST00000622226 TTC16Q8NEE8 873 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 NACAP1Q9BZK3 213 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 HSPA4P34932 840 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 DESP17661 470 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 FKBP15Q5T1M5 1219 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 AQRO60306 1485 aaKnown RBP eCLIP17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 DYNC1I1O14576 645 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 WDR70Q9NW82 654 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 CDKL5O76039 1030 aa17.73■□□□□ 0.43
PDLIM2-220ENST00000622226 NBPF1Q3BBV0 1214 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 ZNF76P36508 570 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 DDX23Q9BUQ8 820 aaKnown RBP17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 MROH2BQ7Z745 1585 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 CADPSQ9ULU8 1353 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 TTLL12Q14166 644 aaPredicted RBP17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 KRT222Q8N1A0 295 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 UBAC1Q9BSL1 405 aa17.72■□□□□ 0.43
PDLIM2-220ENST00000622226 TDO2P48775 406 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 DAAM2Q86T65 1068 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 MCM6Q14566 821 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 HOMER2Q9NSB8 354 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 V9GYY5 206 aaPredicted RBP17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 UACAQ9BZF9 1416 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 C6orf163Q5TEZ5 329 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 NUTM1Q86Y26 1132 aa17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 TNPO1Q92973 898 aaKnown RBP17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 PAIP2Q9BPZ3 127 aaKnown RBP17.71■□□□□ 0.43
PDLIM2-220ENST00000622226 USO1O60763 962 aaKnown RBP17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 KIF6Q6ZMV9 814 aa17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 WASHC2AQ641Q2 1341 aa17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 APBB1IPQ7Z5R6 666 aaPredicted RBP17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 CCDC12Q8WUD4 166 aaPredicted RBP17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 JADE2Q9NQC1 790 aa17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 RAPGEF3O95398 923 aa17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 CCDC18Q5T9S5 1454 aa17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 BRD4O60885 1362 aaPredicted RBP17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 MVPQ14764 893 aaKnown RBP17.7■□□□□ 0.42
PDLIM2-220ENST00000622226 POTEJP0CG39 1038 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 ZC3H6P61129 1189 aaKnown RBP17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 CEP112Q8N8E3 955 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 GNG11P61952 73 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 CCDC82Q8N4S0 544 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 MXRA7P84157 204 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 ATRIPQ8WXE1 791 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 AFAP1Q8N556 730 aa17.69■□□□□ 0.42
PDLIM2-220ENST00000622226 GPRASP1Q5JY77 1395 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 C10orf67Q8IYJ2 551 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 SCLT1Q96NL6 688 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 HSF2BPO75031 334 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 CTNNA2P26232 953 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 PPP2R1AP30153 589 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 HDGFL1Q5TGJ6 251 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 NGLY1Q96IV0 654 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 MYL6BP14649 208 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 FSD2A1L4K1 749 aa17.68■□□□□ 0.42
PDLIM2-220ENST00000622226 YEATS4O95619 227 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 NOP2P46087 812 aaKnown RBP17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 MSL1Q68DK7 614 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 POTEB2H3BUK9 544 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms