RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 IBTKQ9P2D0 1353 aaPredicted RBP8.38□□□□□ -1.07
NEDD9-216ENST00000620854 HMMRO75330 724 aa8.38□□□□□ -1.07
NEDD9-216ENST00000620854 SYAP1Q96A49 352 aaPredicted RBP8.38□□□□□ -1.07
NEDD9-216ENST00000620854 GOLGA6L6A8MZA4 724 aa8.38□□□□□ -1.07
NEDD9-216ENST00000620854 TEFQ10587 303 aa8.38□□□□□ -1.07
NEDD9-216ENST00000620854 RPAP2Q8IXW5 612 aaPredicted RBP8.38□□□□□ -1.07
NEDD9-216ENST00000620854 UNC5CLQ8IV45 518 aa8.38□□□□□ -1.07
NEDD9-216ENST00000620854 NSD2O96028 1365 aa8.37□□□□□ -1.07
NEDD9-216ENST00000620854 NUTM1Q86Y26 1132 aa8.37□□□□□ -1.07
NEDD9-216ENST00000620854 RBM33Q96EV2 1170 aaKnown RBP8.37□□□□□ -1.07
NEDD9-216ENST00000620854 BRD1O95696 1058 aa8.37□□□□□ -1.07
NEDD9-216ENST00000620854 MSH6P52701 1360 aa8.37□□□□□ -1.07
NEDD9-216ENST00000620854 FOXO3O43524 673 aa8.37□□□□□ -1.07
NEDD9-216ENST00000620854 TERF1P54274 439 aa8.37□□□□□ -1.07
NEDD9-216ENST00000620854 NPATQ14207 1427 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 ARAP3Q8WWN8 1544 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 IL13P35225 146 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 CAMK4Q16566 473 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 RAPGEF4Q8WZA2 1011 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 IL25Q9H293 177 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 NLRP2Q9NX02 1062 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 NPHP1O15259 732 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 FKBP5Q13451 457 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-216ENST00000620854 NCBP3Q53F19 620 aaKnown RBP8.36□□□□□ -1.07
NEDD9-216ENST00000620854 ESYT1Q9BSJ8 1104 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 KIF3AQ9Y496 699 aa8.36□□□□□ -1.07
NEDD9-216ENST00000620854 MYOM2P54296 1465 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 PNMA6EA0A0J9YXQ4 647 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 ATP2B3Q16720 1220 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 FERMT3Q86UX7 667 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 CCDC94Q9BW85 323 aaPredicted RBP8.35□□□□□ -1.07
NEDD9-216ENST00000620854 SRCIN1Q9C0H9 1055 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 SHROOM2Q13796 1616 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 VPS37CA5D8V6 355 aaPredicted RBP8.35□□□□□ -1.07
NEDD9-216ENST00000620854 ZNF853P0CG23 659 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 MCM5P33992 734 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 MYRIPQ8NFW9 859 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 MX1P20591 662 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 BRPF1P55201 1214 aaPredicted RBP8.35□□□□□ -1.07
NEDD9-216ENST00000620854 FAM173BQ6P4H8 233 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 ZNF710Q8N1W2 664 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 SPG7Q9UQ90 795 aa8.35□□□□□ -1.07
NEDD9-216ENST00000620854 PHF14O94880 888 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 U2AF2P26368 475 aaKnown RBP eCLIP8.34□□□□□ -1.074e-7■■□□□ 14.3
NEDD9-216ENST00000620854 GNL2Q13823 731 aaKnown RBP8.34□□□□□ -1.07
NEDD9-216ENST00000620854 LRRCC1Q9C099 1032 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 TSPYL4Q9UJ04 414 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 PHF8Q9UPP1 1060 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 RTL1A6NKG5 1358 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 TULP4Q9NRJ4 1543 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 CHMLP26374 656 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 CWC27Q6UX04 472 aaKnown RBP8.34□□□□□ -1.07
NEDD9-216ENST00000620854 MTERF4Q7Z6M4 381 aaKnown RBP8.34□□□□□ -1.07
NEDD9-216ENST00000620854 ZNF592Q92610 1267 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 HECW2Q9P2P5 1572 aa8.34□□□□□ -1.07
NEDD9-216ENST00000620854 QRICH2Q9H0J4 1663 aa8.34□□□□□ -1.08
NEDD9-216ENST00000620854 HSP90B1P14625 803 aaKnown RBP8.34□□□□□ -1.08
NEDD9-216ENST00000620854 BCL2L12Q9HB09 334 aa8.34□□□□□ -1.08
NEDD9-216ENST00000620854 PYCARDQ9ULZ3 195 aa8.34□□□□□ -1.08
NEDD9-216ENST00000620854 KIF1BO60333 1816 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 DNM1Q05193 864 aaKnown RBP8.33□□□□□ -1.08
NEDD9-216ENST00000620854 HSP90AB2PQ58FF8 381 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 SMAP1Q8IYB5 467 aaPredicted RBP8.33□□□□□ -1.08
NEDD9-216ENST00000620854 PIBF1Q8WXW3 757 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 GNAI2P04899 355 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 CCDC83Q8IWF9 413 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 CKAP2LQ8IYA6 745 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 PDCL2Q8N4E4 241 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 SMC3Q9UQE7 1217 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 WDR33Q9C0J8 1336 aaKnown RBP8.33□□□□□ -1.08
NEDD9-216ENST00000620854 TCHHQ07283 1943 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 TET3O43151 1660 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 ZSCAN20P17040 1043 aaPredicted RBP8.33□□□□□ -1.08
NEDD9-216ENST00000620854 NAA30Q147X3 362 aaPredicted RBP8.33□□□□□ -1.08
NEDD9-216ENST00000620854 DNAJC5Q9H3Z4 198 aa8.33□□□□□ -1.08
NEDD9-216ENST00000620854 LRRFIP2Q9Y608 721 aaKnown RBP8.33□□□□□ -1.08
NEDD9-216ENST00000620854 PTCH1Q13635 1447 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 RIOK3O14730 519 aaKnown RBP8.32□□□□□ -1.08
NEDD9-216ENST00000620854 SURF6O75683 361 aaKnown RBP8.32□□□□□ -1.08
NEDD9-216ENST00000620854 C16orf45Q96MC5 204 aaPredicted RBP8.32□□□□□ -1.08
NEDD9-216ENST00000620854 TCEANC2Q96MN5 208 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 SYT1P21579 422 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 CCDC183Q5T5S1 534 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 NECAB1Q8N987 351 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 MED14O60244 1454 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 MROH2AA6NES4 1674 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 AP5Z1O43299 807 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 MCM2P49736 904 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 HMGN5P82970 282 aaKnown RBP8.32□□□□□ -1.08
NEDD9-216ENST00000620854 TBX22Q9Y458 520 aa8.32□□□□□ -1.08
NEDD9-216ENST00000620854 LRRC7Q96NW7 1537 aa8.31□□□□□ -1.08
NEDD9-216ENST00000620854 STX6O43752 255 aa8.31□□□□□ -1.08
NEDD9-216ENST00000620854 KDM4AO75164 1064 aa8.31□□□□□ -1.08
NEDD9-216ENST00000620854 EIF2S2P20042 333 aaKnown RBP8.31□□□□□ -1.08
NEDD9-216ENST00000620854 HSPA2P54652 639 aa8.31□□□□□ -1.08
NEDD9-216ENST00000620854 MAPK8IP2Q13387 824 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-216ENST00000620854 RASEFQ8IZ41 740 aa8.31□□□□□ -1.08
NEDD9-216ENST00000620854 TTC5Q8N0Z6 440 aa8.31□□□□□ -1.08
NEDD9-216ENST00000620854 CASTP20810 708 aaKnown RBP8.31□□□□□ -1.08
NEDD9-216ENST00000620854 AK2P54819 239 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms