RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 TMEM94Q12767 1356 aa15.45■□□□□ 0.06
CIITA-212ENST00000618207 BTBD11A6QL63 1104 aa15.45■□□□□ 0.06
CIITA-212ENST00000618207 C1orf141Q5JVX7 400 aa15.45■□□□□ 0.06
CIITA-212ENST00000618207 DNAJC5Q9H3Z4 198 aa15.45■□□□□ 0.06
CIITA-212ENST00000618207 NLRP2Q9NX02 1062 aa15.45■□□□□ 0.06
CIITA-212ENST00000618207 BMP2KLQ5H9B9 411 aa15.44■□□□□ 0.06
CIITA-212ENST00000618207 RPAP2Q8IXW5 612 aaPredicted RBP15.44■□□□□ 0.06
CIITA-212ENST00000618207 ATP10DQ9P241 1426 aa15.44■□□□□ 0.06
CIITA-212ENST00000618207 PLEKHO1Q53GL0 409 aaPredicted RBP15.44■□□□□ 0.06
CIITA-212ENST00000618207 PLEKHM2Q8IWE5 1019 aa15.44■□□□□ 0.06
CIITA-212ENST00000618207 GSPT1P15170 499 aaKnown RBP15.44■□□□□ 0.06
CIITA-212ENST00000618207 CCT4P50991 539 aaKnown RBP15.44■□□□□ 0.06
CIITA-212ENST00000618207 TSHZ3Q63HK5 1081 aa15.44■□□□□ 0.06
CIITA-212ENST00000618207 TBC1D9Q6ZT07 1266 aa15.44■□□□□ 0.06
CIITA-212ENST00000618207 CSB-PGBD3P0DP91 1061 aa15.43■□□□□ 0.06
CIITA-212ENST00000618207 CHPF2Q9P2E5 772 aa15.43■□□□□ 0.06
CIITA-212ENST00000618207 C1orf167Q5SNV9 1468 aa15.43■□□□□ 0.06
CIITA-212ENST00000618207 PRAMEF22A3QJZ6 481 aa15.43■□□□□ 0.06
CIITA-212ENST00000618207 PNMA6EA0A0J9YXQ4 647 aa15.41■□□□□ 0.06
CIITA-212ENST00000618207 GNAI2P04899 355 aa15.41■□□□□ 0.06
CIITA-212ENST00000618207 EIF4A1P60842 406 aaKnown RBP15.41■□□□□ 0.06
CIITA-212ENST00000618207 LRRFIP2Q9Y608 721 aaKnown RBP15.41■□□□□ 0.06
CIITA-212ENST00000618207 AKAP4Q5JQC9 854 aa15.41■□□□□ 0.06
CIITA-212ENST00000618207 PXDNQ92626 1479 aa15.4■□□□□ 0.06
CIITA-212ENST00000618207 RNMTO43148 476 aaKnown RBP15.39■□□□□ 0.06
CIITA-212ENST00000618207 HMMRO75330 724 aa15.39■□□□□ 0.06
CIITA-212ENST00000618207 SLC39A6Q13433 755 aa15.39■□□□□ 0.06
CIITA-212ENST00000618207 RGPD5Q99666 1765 aa15.39■□□□□ 0.05
CIITA-212ENST00000618207 PI4KAP2A4QPH2 592 aa15.39■□□□□ 0.05
CIITA-212ENST00000618207 PI4KAP1Q8N8J0 262 aa15.39■□□□□ 0.05
CIITA-212ENST00000618207 RBM42Q9BTD8 480 aaKnown RBP15.39■□□□□ 0.05
CIITA-212ENST00000618207 FOXD4L1Q9NU39 408 aa15.39■□□□□ 0.05
CIITA-212ENST00000618207 CEMIPQ8WUJ3 1361 aa15.38■□□□□ 0.05
CIITA-212ENST00000618207 TTC22Q5TAA0 569 aa15.38■□□□□ 0.05
CIITA-212ENST00000618207 RAPGEF4Q8WZA2 1011 aa15.38■□□□□ 0.05
CIITA-212ENST00000618207 USP44Q9H0E7 712 aa15.38■□□□□ 0.05
CIITA-212ENST00000618207 ERBB3P21860 1342 aa15.37■□□□□ 0.05
CIITA-212ENST00000618207 UBTFL1P0CB47 393 aaPredicted RBP15.37■□□□□ 0.05
CIITA-212ENST00000618207 AIMP1Q12904 312 aaKnown RBP15.37■□□□□ 0.05
CIITA-212ENST00000618207 AMOTQ4VCS5 1084 aa15.37■□□□□ 0.05
CIITA-212ENST00000618207 GNAI3P08754 354 aa15.37■□□□□ 0.05
CIITA-212ENST00000618207 PROSER3Q2NL68 480 aa15.37■□□□□ 0.05
CIITA-212ENST00000618207 USP54Q70EL1 1684 aa15.37■□□□□ 0.05
CIITA-212ENST00000618207 CDC45O75419 566 aa15.36■□□□□ 0.05
CIITA-212ENST00000618207 USP35Q9P2H5 1018 aa15.36■□□□□ 0.05
CIITA-212ENST00000618207 LRRC37A3O60309 1634 aa15.36■□□□□ 0.05
CIITA-212ENST00000618207 SDSP20132 328 aa15.36■□□□□ 0.05
CIITA-212ENST00000618207 HSCBQ8IWL3 235 aa15.36■□□□□ 0.05
CIITA-212ENST00000618207 IL1RAPL2Q9NP60 686 aa15.36■□□□□ 0.05
CIITA-212ENST00000618207 NBPF7P0C2Y1 421 aaPredicted RBP15.35■□□□□ 0.05
CIITA-212ENST00000618207 PIP4K2AP48426 406 aaPredicted RBP15.35■□□□□ 0.05
CIITA-212ENST00000618207 SRCIN1Q9C0H9 1055 aa15.35■□□□□ 0.05
CIITA-212ENST00000618207 FAM208AQ9UK61 1670 aaKnown RBP15.34■□□□□ 0.05
CIITA-212ENST00000618207 MST1RQ04912 1400 aa15.34■□□□□ 0.05
CIITA-212ENST00000618207 CADPS2Q86UW7 1296 aa15.34■□□□□ 0.05
CIITA-212ENST00000618207 STRCP1A6NGW2 1772 aa15.33■□□□□ 0.05
CIITA-212ENST00000618207 CD2BP2O95400 341 aaKnown RBP15.33■□□□□ 0.04
CIITA-212ENST00000618207 NFATC2IPQ8NCF5 419 aa15.33■□□□□ 0.04
CIITA-212ENST00000618207 DNAAF4Q8WXU2 420 aa15.33■□□□□ 0.04
CIITA-212ENST00000618207 BABAM1Q9NWV8 329 aa15.33■□□□□ 0.04
CIITA-212ENST00000618207 RBM25P49756 843 aaKnown RBP15.33■□□□□ 0.04
CIITA-212ENST00000618207 MYL6BP14649 208 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 ATP8B2P98198 1209 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 LRRCC1Q9C099 1032 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 NPHP3Q7Z494 1330 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 GIGYF1O75420 1035 aaPredicted RBP15.32■□□□□ 0.04
CIITA-212ENST00000618207 SURF6O75683 361 aaKnown RBP15.32■□□□□ 0.04
CIITA-212ENST00000618207 TATP17735 454 aaPredicted RBP15.32■□□□□ 0.04
CIITA-212ENST00000618207 PDE1AP54750 535 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 CWF19L2Q2TBE0 894 aaKnown RBP15.32■□□□□ 0.04
CIITA-212ENST00000618207 PPP1R42Q7Z4L9 355 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 RILPL2Q969X0 211 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 ANTXR1Q9H6X2 564 aa15.32■□□□□ 0.04
CIITA-212ENST00000618207 TRPM3Q9HCF6 1732 aaPredicted RBP15.32■□□□□ 0.04
CIITA-212ENST00000618207 TRIM6-TRIM34B2RNG4 842 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 HSP90AA1P07900 732 aaKnown RBP15.31■□□□□ 0.04
CIITA-212ENST00000618207 SLIT3O75094 1523 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 SRGAP3O43295 1099 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 HSP90AB1P08238 724 aaKnown RBP15.31■□□□□ 0.04
CIITA-212ENST00000618207 NUTM1Q86Y26 1132 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 KIF2CQ99661 725 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 MAP3K2Q9Y2U5 619 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 MED1Q15648 1581 aaPredicted RBP15.31■□□□□ 0.04
CIITA-212ENST00000618207 CACNA1FO60840 1977 aa15.31■□□□□ 0.04
CIITA-212ENST00000618207 MAP4K4O95819 1239 aaPredicted RBP15.3■□□□□ 0.04
CIITA-212ENST00000618207 DBF4Q9UBU7 674 aaPredicted RBP15.3■□□□□ 0.04
CIITA-212ENST00000618207 BEND3Q5T5X7 828 aa15.29■□□□□ 0.04
CIITA-212ENST00000618207 C9orf78Q9NZ63 289 aaPredicted RBP15.29■□□□□ 0.04
CIITA-212ENST00000618207 ZNF335Q9H4Z2 1342 aaPredicted RBP15.29■□□□□ 0.04
CIITA-212ENST00000618207 MX1P20591 662 aa15.28■□□□□ 0.04
CIITA-212ENST00000618207 BRINP3Q76B58 766 aa15.28■□□□□ 0.04
CIITA-212ENST00000618207 ADCY9O60503 1353 aa15.28■□□□□ 0.04
CIITA-212ENST00000618207 OS9Q13438 667 aaPredicted RBP15.27■□□□□ 0.04
CIITA-212ENST00000618207 ZNF790Q6PG37 636 aa15.27■□□□□ 0.04
CIITA-212ENST00000618207 ARXQ96QS3 562 aa15.27■□□□□ 0.04
CIITA-212ENST00000618207 PRDM11Q9NQV5 511 aa15.27■□□□□ 0.04
CIITA-212ENST00000618207 SOS1Q07889 1333 aaPredicted RBP15.27■□□□□ 0.04
CIITA-212ENST00000618207 PHKG2P15735 406 aa15.27■□□□□ 0.03
CIITA-212ENST00000618207 CASC1Q6TDU7 716 aa15.27■□□□□ 0.03
CIITA-212ENST00000618207 JARID2Q92833 1246 aaPredicted RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms