RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TMOD3Q9NYL9 352 aa17.97■□□□□ 0.47
LINC00540-202ENST00000616974 PALLDQ8WX93 1383 aa17.97■□□□□ 0.47
LINC00540-202ENST00000616974 MAP3K5Q99683 1374 aa17.97■□□□□ 0.47
LINC00540-202ENST00000616974 SLC39A6Q13433 755 aa17.96■□□□□ 0.47
LINC00540-202ENST00000616974 ATG3Q9NT62 314 aa17.96■□□□□ 0.47
LINC00540-202ENST00000616974 R3HDM1Q15032 1099 aaKnown RBP17.96■□□□□ 0.47
LINC00540-202ENST00000616974 MYH14Q7Z406 1995 aaKnown RBP17.95■□□□□ 0.46
LINC00540-202ENST00000616974 C5P01031 1676 aa17.95■□□□□ 0.46
LINC00540-202ENST00000616974 ZNF827Q17R98 1081 aa17.95■□□□□ 0.46
LINC00540-202ENST00000616974 MRS2Q9HD23 443 aa17.95■□□□□ 0.46
LINC00540-202ENST00000616974 MRC1P22897 1456 aa17.95■□□□□ 0.46
LINC00540-202ENST00000616974 GNAT3A8MTJ3 354 aa17.94■□□□□ 0.46
LINC00540-202ENST00000616974 CABP4P57796 275 aa17.94■□□□□ 0.46
LINC00540-202ENST00000616974 AMIGO3Q86WK7 504 aa17.94■□□□□ 0.46
LINC00540-202ENST00000616974 ERVV-2B6SEH9 535 aa17.93■□□□□ 0.46
LINC00540-202ENST00000616974 NEUROD2Q15784 382 aa17.93■□□□□ 0.46
LINC00540-202ENST00000616974 GAS2L2Q8NHY3 880 aa17.93■□□□□ 0.46
LINC00540-202ENST00000616974 SLC52A2Q9HAB3 445 aa17.93■□□□□ 0.46
LINC00540-202ENST00000616974 KCNQ3O43525 872 aa17.92■□□□□ 0.46
LINC00540-202ENST00000616974 WDR43Q15061 677 aaKnown RBP eCLIP17.92■□□□□ 0.46
LINC00540-202ENST00000616974 PNISRQ8TF01 805 aaKnown RBP17.92■□□□□ 0.46
LINC00540-202ENST00000616974 PTCD1O75127 700 aaKnown RBP17.92■□□□□ 0.46
LINC00540-202ENST00000616974 HSP90AB1P08238 724 aaKnown RBP17.92■□□□□ 0.46
LINC00540-202ENST00000616974 ITPK1Q13572 414 aa17.92■□□□□ 0.46
LINC00540-202ENST00000616974 CCNL1Q9UK58 526 aaPredicted RBP17.92■□□□□ 0.46
LINC00540-202ENST00000616974 CEMIPQ8WUJ3 1361 aa17.91■□□□□ 0.46
LINC00540-202ENST00000616974 UBR2Q8IWV8 1755 aa17.91■□□□□ 0.46
LINC00540-202ENST00000616974 MIS18AQ9NYP9 233 aa17.91■□□□□ 0.46
LINC00540-202ENST00000616974 TJP1Q07157 1748 aa17.9■□□□□ 0.46
LINC00540-202ENST00000616974 NFE2L2Q16236 605 aa17.89■□□□□ 0.45
LINC00540-202ENST00000616974 COL5A3P25940 1745 aaPredicted RBP17.89■□□□□ 0.45
LINC00540-202ENST00000616974 KCPQ6ZWJ8 1503 aa17.89■□□□□ 0.45
LINC00540-202ENST00000616974 LOC102724428A0A0B4J2F2 783 aa17.89■□□□□ 0.45
LINC00540-202ENST00000616974 SIK1P57059 783 aa17.89■□□□□ 0.45
LINC00540-202ENST00000616974 DIEXFQ68CQ4 756 aaKnown RBP17.89■□□□□ 0.45
LINC00540-202ENST00000616974 RBM42Q9BTD8 480 aaKnown RBP17.89■□□□□ 0.45
LINC00540-202ENST00000616974 C4BP0C0L5 1744 aa17.88■□□□□ 0.45
LINC00540-202ENST00000616974 MAPK8IP3Q9UPT6 1336 aa17.88■□□□□ 0.45
LINC00540-202ENST00000616974 TMPOP42166 694 aaKnown RBP17.88■□□□□ 0.45
LINC00540-202ENST00000616974 LINC00116Q8NCU8 138 aa17.88■□□□□ 0.45
LINC00540-202ENST00000616974 UBR3Q6ZT12 1888 aa17.88■□□□□ 0.45
LINC00540-202ENST00000616974 MIER1Q8N108 512 aa17.87■□□□□ 0.45
LINC00540-202ENST00000616974 APAF1O14727 1248 aa17.87■□□□□ 0.45
LINC00540-202ENST00000616974 RIPK4P57078 832 aa17.87■□□□□ 0.45
LINC00540-202ENST00000616974 CASZ1Q86V15 1759 aa17.86■□□□□ 0.45
LINC00540-202ENST00000616974 FAM9BQ8IZU0 186 aa17.86■□□□□ 0.45
LINC00540-202ENST00000616974 PRAMEF22A3QJZ6 481 aa17.86■□□□□ 0.45
LINC00540-202ENST00000616974 AKT1S1Q96B36 256 aa17.86■□□□□ 0.45
LINC00540-202ENST00000616974 RUNDC1Q96C34 613 aa17.86■□□□□ 0.45
LINC00540-202ENST00000616974 TRIM35Q9UPQ4 493 aa17.86■□□□□ 0.45
LINC00540-202ENST00000616974 ATP6V1AP38606 617 aa17.85■□□□□ 0.45
LINC00540-202ENST00000616974 SLC15A2Q16348 729 aa17.85■□□□□ 0.45
LINC00540-202ENST00000616974 TEFQ10587 303 aa17.84■□□□□ 0.45
LINC00540-202ENST00000616974 KDM3BQ7LBC6 1761 aa17.84■□□□□ 0.45
LINC00540-202ENST00000616974 SLC27A3Q5K4L6 730 aa17.84■□□□□ 0.45
LINC00540-202ENST00000616974 RTF1Q92541 710 aaKnown RBP17.83■□□□□ 0.45
LINC00540-202ENST00000616974 ZNF496Q96IT1 587 aaPredicted RBP17.83■□□□□ 0.45
LINC00540-202ENST00000616974 SMARCC1Q92922 1105 aaPredicted RBP17.82■□□□□ 0.44
LINC00540-202ENST00000616974 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
LINC00540-202ENST00000616974 ZNF790Q6PG37 636 aa17.81■□□□□ 0.44
LINC00540-202ENST00000616974 DNAJC10Q8IXB1 793 aa17.81■□□□□ 0.44
LINC00540-202ENST00000616974 ZNF831Q5JPB2 1677 aa17.81■□□□□ 0.44
LINC00540-202ENST00000616974 PNPLA7Q6ZV29 1317 aa17.81■□□□□ 0.44
LINC00540-202ENST00000616974 BTBD11A6QL63 1104 aa17.81■□□□□ 0.44
LINC00540-202ENST00000616974 NEFMP07197 916 aa17.81■□□□□ 0.44
LINC00540-202ENST00000616974 NBPF14Q5TI25 921 aa17.8■□□□□ 0.44
LINC00540-202ENST00000616974 STK32BQ9NY57 414 aa17.8■□□□□ 0.44
LINC00540-202ENST00000616974 QSER1Q2KHR3 1735 aa17.8■□□□□ 0.44
LINC00540-202ENST00000616974 PHF14O94880 888 aa17.8■□□□□ 0.44
LINC00540-202ENST00000616974 ZBTB7AO95365 584 aa17.8■□□□□ 0.44
LINC00540-202ENST00000616974 PIP4K2AP48426 406 aaPredicted RBP17.79■□□□□ 0.44
LINC00540-202ENST00000616974 TFCP2L1Q9NZI6 479 aa17.79■□□□□ 0.44
LINC00540-202ENST00000616974 CICQ96RK0 1608 aaPredicted RBP17.78■□□□□ 0.44
LINC00540-202ENST00000616974 C4AP0C0L4 1744 aa17.78■□□□□ 0.44
LINC00540-202ENST00000616974 KRT24Q2M2I5 525 aa17.78■□□□□ 0.44
LINC00540-202ENST00000616974 HTATSF1O43719 755 aaKnown RBP17.77■□□□□ 0.44
LINC00540-202ENST00000616974 COL23A1Q86Y22 540 aaPredicted RBP17.77■□□□□ 0.44
LINC00540-202ENST00000616974 PNNQ9H307 717 aaKnown RBP17.77■□□□□ 0.44
LINC00540-202ENST00000616974 TAF7Q15545 349 aaPredicted RBP17.77■□□□□ 0.43
LINC00540-202ENST00000616974 GNPATO15228 680 aa17.76■□□□□ 0.43
LINC00540-202ENST00000616974 CRKLP46109 303 aaKnown RBP17.76■□□□□ 0.43
LINC00540-202ENST00000616974 TTC5Q8N0Z6 440 aa17.75■□□□□ 0.43
LINC00540-202ENST00000616974 ATF5Q9Y2D1 282 aaPredicted RBP17.75■□□□□ 0.43
LINC00540-202ENST00000616974 INTS5Q6P9B9 1019 aaKnown RBP17.75■□□□□ 0.43
LINC00540-202ENST00000616974 HEG1Q9ULI3 1381 aa17.75■□□□□ 0.43
LINC00540-202ENST00000616974 LAS1LQ9Y4W2 734 aaKnown RBP17.75■□□□□ 0.43
LINC00540-202ENST00000616974 USP16Q9Y5T5 823 aa17.75■□□□□ 0.43
LINC00540-202ENST00000616974 CYP19A1P11511 503 aaPredicted RBP17.74■□□□□ 0.43
LINC00540-202ENST00000616974 MSL1Q68DK7 614 aa17.74■□□□□ 0.43
LINC00540-202ENST00000616974 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.74■□□□□ 0.43
LINC00540-202ENST00000616974 AK7Q96M32 723 aa17.74■□□□□ 0.43
LINC00540-202ENST00000616974 ZBTB1Q9Y2K1 713 aa17.74■□□□□ 0.43
LINC00540-202ENST00000616974 MSH5O43196 834 aa17.72■□□□□ 0.43
LINC00540-202ENST00000616974 A1BGP04217 495 aa17.72■□□□□ 0.43
LINC00540-202ENST00000616974 EIF4A1P60842 406 aaKnown RBP17.71■□□□□ 0.43
LINC00540-202ENST00000616974 TSPYL4Q9UJ04 414 aa17.71■□□□□ 0.43
LINC00540-202ENST00000616974 FMNL2Q96PY5 1086 aa17.71■□□□□ 0.42
LINC00540-202ENST00000616974 SPINK5Q9NQ38 1064 aaPredicted RBP17.71■□□□□ 0.42
LINC00540-202ENST00000616974 LAMB4A4D0S4 1761 aa17.7■□□□□ 0.42
LINC00540-202ENST00000616974 CNTNAP4Q9C0A0 1308 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms