RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 PKNOX2Q96KN3 472 aa15.07■□□□□ 0
MSH6-213ENST00000614496 CHMP4AQ9BY43 222 aa15.06■□□□□ 0
MSH6-213ENST00000614496 PPP1R42Q7Z4L9 355 aa15.06■□□□□ 0
MSH6-213ENST00000614496 ZNF592Q92610 1267 aa15.06■□□□□ 0
MSH6-213ENST00000614496 KIF2CQ99661 725 aa15.06■□□□□ 0
MSH6-213ENST00000614496 FSD1Q9BTV5 496 aa15.06■□□□□ 0
MSH6-213ENST00000614496 CHL1O00533 1208 aa15.06■□□□□ 0
MSH6-213ENST00000614496 CSB-PGBD3P0DP91 1061 aa15.06■□□□□ 0
MSH6-213ENST00000614496 PRPF40BQ6NWY9 871 aaKnown RBP15.06■□□□□ 0
MSH6-213ENST00000614496 FAM184AQ8NB25 1140 aa15.06■□□□□ 0
MSH6-213ENST00000614496 UHRF1BP1LA0JNW5 1464 aa15.05■□□□□ 0
MSH6-213ENST00000614496 HDAC5Q9UQL6 1122 aa15.05■□□□□ 0
MSH6-213ENST00000614496 TMEM63CQ9P1W3 806 aa15.05■□□□□ -0
MSH6-213ENST00000614496 HCLS1P14317 486 aaPredicted RBP15.05■□□□□ -0
MSH6-213ENST00000614496 PSME1Q06323 249 aa15.05■□□□□ -0
MSH6-213ENST00000614496 RBM33Q96EV2 1170 aaKnown RBP15.05■□□□□ -0
MSH6-213ENST00000614496 CYP46A1Q9Y6A2 500 aa15.05■□□□□ -0
MSH6-213ENST00000614496 CEBPZQ03701 1054 aaKnown RBP15.04■□□□□ -0
MSH6-213ENST00000614496 USP48Q86UV5 1035 aa15.04■□□□□ -0
MSH6-213ENST00000614496 PDRG1Q9NUG6 133 aa15.04■□□□□ -0
MSH6-213ENST00000614496 PNMA6EA0A0J9YXQ4 647 aa15.04■□□□□ -0
MSH6-213ENST00000614496 CNPY2Q9Y2B0 182 aa15.04■□□□□ -0
MSH6-213ENST00000614496 LARP1BQ659C4 914 aaKnown RBP15.04■□□□□ -0
MSH6-213ENST00000614496 CPA1P15085 419 aa15.03■□□□□ -0
MSH6-213ENST00000614496 CHMLP26374 656 aa15.03■□□□□ -0
MSH6-213ENST00000614496 CAMK4Q16566 473 aa15.03■□□□□ -0
MSH6-213ENST00000614496 AACSQ86V21 672 aa15.03■□□□□ -0
MSH6-213ENST00000614496 CEBPAP49715 358 aaPredicted RBP15.03■□□□□ -0
MSH6-213ENST00000614496 KIF1BPQ96EK5 621 aa15.03■□□□□ -0
MSH6-213ENST00000614496 IQSEC2Q5JU85 1478 aa15.03■□□□□ -0
MSH6-213ENST00000614496 CEP152O94986 1710 aa15.03■□□□□ -0
MSH6-213ENST00000614496 ZMYND15Q9H091 742 aa15.03■□□□□ -0
MSH6-213ENST00000614496 PALD1Q9ULE6 856 aa15.03■□□□□ -0
MSH6-213ENST00000614496 ATP8B2P98198 1209 aa15.03■□□□□ -0
MSH6-213ENST00000614496 ZNF530Q6P9A1 599 aaPredicted RBP15.03■□□□□ -0
MSH6-213ENST00000614496 RIC3Q7Z5B4 369 aa15.03■□□□□ -0
MSH6-213ENST00000614496 OFD1O75665 1012 aa15.02■□□□□ -0
MSH6-213ENST00000614496 GOLGA6L19H0YKK7 550 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 HTATSF1O43719 755 aaKnown RBP15.02□□□□□ -0.01
MSH6-213ENST00000614496 ZNF445P59923 1031 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 RNF20Q5VTR2 975 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 GPT2Q8TD30 523 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 ZKSCAN5Q9Y2L8 839 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 RTL1A6NKG5 1358 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 QRICH2Q9H0J4 1663 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 GIMAP6Q6P9H5 292 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 NLRP1Q9C000 1473 aa15.02□□□□□ -0.01
MSH6-213ENST00000614496 PI4KAP2A4QPH2 592 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 ZNF853P0CG23 659 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 NEXNQ0ZGT2 675 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 PI4KAP1Q8N8J0 262 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 TCEANC2Q96MN5 208 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 PDCL3Q9H2J4 239 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 RHPN1Q8TCX5 695 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 TRIM5Q9C035 493 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 PHAXQ9H814 394 aaKnown RBP15.01□□□□□ -0.01
MSH6-213ENST00000614496 BECN2A8MW95 431 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 EYA1Q99502 592 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 TTC12Q9H892 705 aaPredicted RBP15.01□□□□□ -0.01
MSH6-213ENST00000614496 LIMCH1Q9UPQ0 1083 aa15.01□□□□□ -0.01
MSH6-213ENST00000614496 MAP3K19Q56UN5 1328 aa15□□□□□ -0.01
MSH6-213ENST00000614496 STX6O43752 255 aa15□□□□□ -0.01
MSH6-213ENST00000614496 ADCY5O95622 1261 aa15□□□□□ -0.01
MSH6-213ENST00000614496 CCDC183Q5T5S1 534 aa15□□□□□ -0.01
MSH6-213ENST00000614496 SASS6Q6UVJ0 657 aa15□□□□□ -0.01
MSH6-213ENST00000614496 AMOTL2Q9Y2J4 779 aa15□□□□□ -0.01
MSH6-213ENST00000614496 YEATS2Q9ULM3 1422 aa15□□□□□ -0.01
MSH6-213ENST00000614496 GADD45BO75293 160 aaPredicted RBP15□□□□□ -0.01
MSH6-213ENST00000614496 BRPF1P55201 1214 aaPredicted RBP15□□□□□ -0.01
MSH6-213ENST00000614496 NECAB1Q8N987 351 aa15□□□□□ -0.01
MSH6-213ENST00000614496 CCDC8Q9H0W5 538 aaPredicted RBP15□□□□□ -0.01
MSH6-213ENST00000614496 TULP4Q9NRJ4 1543 aa15□□□□□ -0.01
MSH6-213ENST00000614496 MAP7D2Q96T17 732 aa15□□□□□ -0.01
MSH6-213ENST00000614496 PRDM10Q9NQV6 1147 aa15□□□□□ -0.01
MSH6-213ENST00000614496 LETM1O95202 739 aaPredicted RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 EDC4Q6P2E9 1401 aaKnown RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 BTBD11A6QL63 1104 aa14.99□□□□□ -0.01
MSH6-213ENST00000614496 MPRIPQ6WCQ1 1025 aa14.99□□□□□ -0.01
MSH6-213ENST00000614496 DNAJC2Q99543 621 aaKnown RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 DDX58O95786 925 aaKnown RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 GORABQ5T7V8 394 aa14.99□□□□□ -0.01
MSH6-213ENST00000614496 BOLA2Q9H3K6 86 aa14.99□□□□□ -0.01
MSH6-213ENST00000614496 NSFL1CQ9UNZ2 370 aaKnown RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 SF3A1Q15459 793 aaKnown RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 TFIP11Q9UBB9 837 aaKnown RBP14.99□□□□□ -0.01
MSH6-213ENST00000614496 FAM135BQ49AJ0 1406 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 GLRX3O76003 335 aaKnown RBP14.98□□□□□ -0.01
MSH6-213ENST00000614496 CCDC192P0DO97 292 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 MYL6BP14649 208 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 GJB2P29033 226 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 DNAAF4Q8WXU2 420 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 GLI2P10070 1586 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 KRT85P78386 507 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 CKAP2LQ8IYA6 745 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 NEUROD6Q96NK8 337 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 PPP1R9BQ96SB3 815 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 RAB11FIP3O75154 756 aa14.98□□□□□ -0.01
MSH6-213ENST00000614496 PSMA5P28066 241 aa14.97□□□□□ -0.01
MSH6-213ENST00000614496 BLOC1S2Q6QNY1 142 aa14.97□□□□□ -0.01
MSH6-213ENST00000614496 AK2P54819 239 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms