RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PALLDQ8WX93 1383 aa21.89■■□□□ 1.1
CCDC28A-202ENST00000611852 DLG5Q8TDM6 1919 aa21.88■■□□□ 1.09
CCDC28A-202ENST00000611852 HTATSF1O43719 755 aaKnown RBP21.88■■□□□ 1.09
CCDC28A-202ENST00000611852 RTF1Q92541 710 aaKnown RBP21.88■■□□□ 1.09
CCDC28A-202ENST00000611852 ATG3Q9NT62 314 aa21.88■■□□□ 1.09
CCDC28A-202ENST00000611852 SLC27A3Q5K4L6 730 aa21.87■■□□□ 1.09
CCDC28A-202ENST00000611852 LRRC4BQ9NT99 713 aa21.87■■□□□ 1.09
CCDC28A-202ENST00000611852 MCM10Q7L590 875 aa21.86■■□□□ 1.09
CCDC28A-202ENST00000611852 TMPOP42166 694 aaKnown RBP21.85■■□□□ 1.09
CCDC28A-202ENST00000611852 KCNQ4P56696 695 aa21.85■■□□□ 1.09
CCDC28A-202ENST00000611852 TEFQ10587 303 aa21.85■■□□□ 1.09
CCDC28A-202ENST00000611852 DCTN1Q14203 1278 aa21.85■■□□□ 1.09
CCDC28A-202ENST00000611852 CCNL1Q9UK58 526 aaPredicted RBP21.85■■□□□ 1.09
CCDC28A-202ENST00000611852 RIPK4P57078 832 aa21.84■■□□□ 1.09
CCDC28A-202ENST00000611852 SIPA1L3O60292 1781 aaPredicted RBP21.84■■□□□ 1.09
CCDC28A-202ENST00000611852 RRP7AQ9Y3A4 280 aaKnown RBP21.83■■□□□ 1.09
CCDC28A-202ENST00000611852 LOC102724428A0A0B4J2F2 783 aa21.82■■□□□ 1.08
CCDC28A-202ENST00000611852 SIK1P57059 783 aa21.82■■□□□ 1.08
CCDC28A-202ENST00000611852 PAPPAQ13219 1627 aa21.82■■□□□ 1.08
CCDC28A-202ENST00000611852 NBPF14Q5TI25 921 aa21.81■■□□□ 1.08
CCDC28A-202ENST00000611852 ANO8Q9HCE9 1232 aaPredicted RBP21.81■■□□□ 1.08
CCDC28A-202ENST00000611852 CCER2I3L3R5 266 aa21.8■■□□□ 1.08
CCDC28A-202ENST00000611852 SLC39A6Q13433 755 aa21.8■■□□□ 1.08
CCDC28A-202ENST00000611852 NEUROD2Q15784 382 aa21.8■■□□□ 1.08
CCDC28A-202ENST00000611852 APAF1O14727 1248 aa21.8■■□□□ 1.08
CCDC28A-202ENST00000611852 LMOD3Q0VAK6 560 aa21.79■■□□□ 1.08
CCDC28A-202ENST00000611852 FAM9BQ8IZU0 186 aa21.79■■□□□ 1.08
CCDC28A-202ENST00000611852 SLC4A9Q96Q91 983 aa21.79■■□□□ 1.08
CCDC28A-202ENST00000611852 RBM42Q9BTD8 480 aaKnown RBP21.79■■□□□ 1.08
CCDC28A-202ENST00000611852 THUMPD2Q9BTF0 503 aaKnown RBP21.79■■□□□ 1.08
CCDC28A-202ENST00000611852 PTCD1O75127 700 aaKnown RBP21.78■■□□□ 1.08
CCDC28A-202ENST00000611852 MIER1Q8N108 512 aa21.78■■□□□ 1.08
CCDC28A-202ENST00000611852 TAF1LQ8IZX4 1826 aa21.78■■□□□ 1.08
CCDC28A-202ENST00000611852 C5P01031 1676 aa21.77■■□□□ 1.08
CCDC28A-202ENST00000611852 ATP6V1AP38606 617 aa21.77■■□□□ 1.08
CCDC28A-202ENST00000611852 R3HDM1Q15032 1099 aaKnown RBP21.77■■□□□ 1.08
CCDC28A-202ENST00000611852 TRIM35Q9UPQ4 493 aa21.77■■□□□ 1.08
CCDC28A-202ENST00000611852 ZNF831Q5JPB2 1677 aa21.77■■□□□ 1.07
CCDC28A-202ENST00000611852 BTBD11A6QL63 1104 aa21.76■■□□□ 1.07
CCDC28A-202ENST00000611852 ITPK1Q13572 414 aa21.76■■□□□ 1.07
CCDC28A-202ENST00000611852 SLC15A2Q16348 729 aa21.76■■□□□ 1.07
CCDC28A-202ENST00000611852 ZNF790Q6PG37 636 aa21.76■■□□□ 1.07
CCDC28A-202ENST00000611852 STK32BQ9NY57 414 aa21.76■■□□□ 1.07
CCDC28A-202ENST00000611852 KCPQ6ZWJ8 1503 aa21.76■■□□□ 1.07
CCDC28A-202ENST00000611852 PSDA5PKW4 1024 aaPredicted RBP21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 TAF7Q15545 349 aaPredicted RBP21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 ZNF827Q17R98 1081 aa21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 AKT1S1Q96B36 256 aa21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 UBR2Q8IWV8 1755 aa21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 HMGB2P26583 209 aaKnown RBP21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 TTC5Q8N0Z6 440 aa21.75■■□□□ 1.07
CCDC28A-202ENST00000611852 LINC00116Q8NCU8 138 aa21.73■■□□□ 1.07
CCDC28A-202ENST00000611852 C4BP0C0L5 1744 aa21.72■■□□□ 1.07
CCDC28A-202ENST00000611852 KCNQ3O43525 872 aa21.72■■□□□ 1.07
CCDC28A-202ENST00000611852 ZNF496Q96IT1 587 aaPredicted RBP21.72■■□□□ 1.07
CCDC28A-202ENST00000611852 CICQ96RK0 1608 aaPredicted RBP21.72■■□□□ 1.07
CCDC28A-202ENST00000611852 MIS18AQ9NYP9 233 aa21.71■■□□□ 1.07
CCDC28A-202ENST00000611852 VSIG10Q8N0Z9 540 aa21.7■■□□□ 1.07
CCDC28A-202ENST00000611852 TJP1Q07157 1748 aa21.7■■□□□ 1.06
CCDC28A-202ENST00000611852 COL5A3P25940 1745 aaPredicted RBP21.7■■□□□ 1.06
CCDC28A-202ENST00000611852 SENP3-EIF4A1A0A087X0R7 540 aa21.7■■□□□ 1.06
CCDC28A-202ENST00000611852 FMNL2Q96PY5 1086 aa21.69■■□□□ 1.06
CCDC28A-202ENST00000611852 TFCP2L1Q9NZI6 479 aa21.69■■□□□ 1.06
CCDC28A-202ENST00000611852 KDM3BQ7LBC6 1761 aa21.69■■□□□ 1.06
CCDC28A-202ENST00000611852 HEG1Q9ULI3 1381 aa21.68■■□□□ 1.06
CCDC28A-202ENST00000611852 DNAJC10Q8IXB1 793 aa21.68■■□□□ 1.06
CCDC28A-202ENST00000611852 TUBGCP6Q96RT7 1819 aa21.67■■□□□ 1.06
CCDC28A-202ENST00000611852 QSER1Q2KHR3 1735 aa21.67■■□□□ 1.06
CCDC28A-202ENST00000611852 CCDC27Q2M243 656 aa21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 NCBP3Q53F19 620 aaKnown RBP21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 AK7Q96M32 723 aa21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 PDGFDQ9GZP0 370 aaPredicted RBP21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 BABAM1Q9NWV8 329 aa21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 PNPLA7Q6ZV29 1317 aa21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 CNTNAP4Q9C0A0 1308 aa21.66■■□□□ 1.06
CCDC28A-202ENST00000611852 RC3H1Q5TC82 1133 aaKnown RBP21.65■■□□□ 1.06
CCDC28A-202ENST00000611852 TSPYL4Q9UJ04 414 aa21.65■■□□□ 1.06
CCDC28A-202ENST00000611852 CASZ1Q86V15 1759 aa21.64■■□□□ 1.06
CCDC28A-202ENST00000611852 UBR3Q6ZT12 1888 aa21.64■■□□□ 1.06
CCDC28A-202ENST00000611852 MYH14Q7Z406 1995 aaKnown RBP21.64■■□□□ 1.06
CCDC28A-202ENST00000611852 CHL1O00533 1208 aa21.64■■□□□ 1.05
CCDC28A-202ENST00000611852 GNPATO15228 680 aa21.64■■□□□ 1.05
CCDC28A-202ENST00000611852 CYP19A1P11511 503 aaPredicted RBP21.64■■□□□ 1.05
CCDC28A-202ENST00000611852 CRKLP46109 303 aaKnown RBP21.64■■□□□ 1.05
CCDC28A-202ENST00000611852 AMIGO3Q86WK7 504 aa21.64■■□□□ 1.05
CCDC28A-202ENST00000611852 WWC1Q8IX03 1113 aa21.64■■□□□ 1.05
CCDC28A-202ENST00000611852 EIF4A1P60842 406 aaKnown RBP21.63■■□□□ 1.05
CCDC28A-202ENST00000611852 CALD1Q05682 793 aaKnown RBP21.62■■□□□ 1.05
CCDC28A-202ENST00000611852 CFAP44Q96MT7 982 aa21.62■■□□□ 1.05
CCDC28A-202ENST00000611852 TEX13AQ9BXU3 409 aaPredicted RBP21.62■■□□□ 1.05
CCDC28A-202ENST00000611852 LAS1LQ9Y4W2 734 aaKnown RBP21.62■■□□□ 1.05
CCDC28A-202ENST00000611852 SNRPA1P09661 255 aaKnown RBP21.61■■□□□ 1.05
CCDC28A-202ENST00000611852 INTS5Q6P9B9 1019 aaKnown RBP21.61■■□□□ 1.05
CCDC28A-202ENST00000611852 SMIM5Q71RC9 77 aa21.61■■□□□ 1.05
CCDC28A-202ENST00000611852 SALL2Q9Y467 1007 aaPredicted RBP21.61■■□□□ 1.05
CCDC28A-202ENST00000611852 PRAMEF22A3QJZ6 481 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 STARD3NLO95772 234 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 ZNF853P0CG23 659 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 SSFA2P28290 1259 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 COL23A1Q86Y22 540 aaPredicted RBP21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms