RNA–Protein interactions for RNA: ENST00000602898.1

SPTBN1-206, Transcript of spectrin beta, non-erythrocytic 1, humanhuman

TSL 1 (best)

Gene SPTBN1, Length 2,942 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTBN1-206ENST00000602898 CCDC88BA6NC98 1476 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 PTPRMP28827 1452 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 CLCN1P35523 988 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 SERPINB4P48594 390 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 TERF1P54274 439 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 CSPP1Q1MSJ5 1256 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 NUDT18Q6ZVK8 323 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 RAVER1Q8IY67 606 aaKnown RBP6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 MAP7D2Q96T17 732 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 RRAGDQ9NQL2 400 aaPredicted RBP6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 ZMYM4Q5VZL5 1548 aa6.28□□□□□ -1.4
SPTBN1-206ENST00000602898 DMRTA1Q5VZB9 504 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 JDP2Q8WYK2 163 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 TSR2Q969E8 191 aaKnown RBP6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 COL4A3BPQ9Y5P4 624 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 WRNQ14191 1432 aaPredicted RBP eCLIP6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 KIF21BO75037 1637 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 FER1L4A9Z1Z3 1794 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 AMHR2Q16671 573 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 C1orf131Q8NDD1 294 aaKnown RBP6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 BACH2Q9BYV9 841 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 TBC1D2BQ9UPU7 963 aa6.27□□□□□ -1.41
SPTBN1-206ENST00000602898 ARHGEF40Q8TER5 1519 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 DDX46Q7L014 1031 aaKnown RBP6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 TSPAN18Q96SJ8 248 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 LRRC27Q9C0I9 530 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 ADGRG1Q9Y653 693 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 REREQ9P2R6 1566 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 RNF40O75150 1001 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 MAP9Q49MG5 647 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 PHLDB3Q6NSJ2 640 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 KCNH8Q96L42 1107 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 NEUROD6Q96NK8 337 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 PRKAG2Q9UGJ0 569 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 RIMBP2O15034 1052 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 CT47B1P0C2W7 299 aaPredicted RBP6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 LIG1P18858 919 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 TNNI2P48788 182 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 NOP9Q86U38 636 aaKnown RBP6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 PUF60Q9UHX1 559 aaKnown RBP6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 PDZRN3Q9UPQ7 1066 aa6.26□□□□□ -1.41
SPTBN1-206ENST00000602898 LCE2DQ5TA82 110 aaPredicted RBP6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 HDGFL1Q5TGJ6 251 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 TAF3Q5VWG9 929 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 CACTIN-AS1Q8N1I8 211 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 MTMR14Q8NCE2 650 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 CHMP7Q8WUX9 453 aaPredicted RBP6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 PIK3R5Q8WYR1 880 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 CCDC85AQ96PX6 553 aaPredicted RBP6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 BEGAINQ9BUH8 593 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 SFMBT1Q9UHJ3 866 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 GNEQ9Y223 722 aaKnown RBP6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 EIF3JO75822 258 aaKnown RBP6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 HDLBPQ00341 1268 aaKnown RBP6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 PPP4R3BQ5MIZ7 849 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 FILIP1Q7Z7B0 1213 aa6.25□□□□□ -1.41
SPTBN1-206ENST00000602898 DYTNA2CJ06 578 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 HMGB1P1B2RPK0 211 aaPredicted RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 ZNF513Q8N8E2 541 aaPredicted RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 ENOX1Q8TC92 643 aaKnown RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 PXYLP1Q8TE99 480 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 ZNF512BQ96KM6 892 aaPredicted RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 EPAS1Q99814 870 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 PCDH12Q9NPG4 1184 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 ZCCHC11Q5TAX3 1644 aaKnown RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 SPDYE5A6NIY4 337 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 S100BP04271 92 aaPredicted RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 HOXB1P14653 301 aaPredicted RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 PRSS12P56730 875 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 DMTNQ08495 405 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 FRAT1Q92837 279 aaPredicted RBP6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 IL17RAQ96F46 866 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 IFT57Q9NWB7 429 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 PNMA3Q9UL41 463 aa6.24□□□□□ -1.41
SPTBN1-206ENST00000602898 LTBP4Q8N2S1 1624 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 DDX11L8A8MPP1 907 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 KIF20AO95235 890 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 IBSPP21815 317 aaPredicted RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 LMOD1P29536 600 aaPredicted RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 SSTR3P32745 418 aaPredicted RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 EMP3P54852 163 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 GUCA2AQ02747 115 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 SKAP1Q86WV1 359 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 RCCD1A6NED2 376 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 MARSP56192 900 aaKnown RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 EGFL6Q8IUX8 553 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 INO80BQ9C086 356 aaPredicted RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 CHST12Q9NRB3 414 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 DIS3Q9Y2L1 958 aaKnown RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 PRG4Q92954 1404 aaPredicted RBP6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 RAD54L2Q9Y4B4 1467 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 STRCQ7RTU9 1775 aa6.23□□□□□ -1.41
SPTBN1-206ENST00000602898 VGLL3A8MV65 326 aa6.22□□□□□ -1.41
SPTBN1-206ENST00000602898 RAD51AP2Q09MP3 1159 aa6.22□□□□□ -1.41
SPTBN1-206ENST00000602898 PDILTQ8N807 584 aa6.22□□□□□ -1.41
SPTBN1-206ENST00000602898 NEO1Q92859 1461 aa6.22□□□□□ -1.41
SPTBN1-206ENST00000602898 SETD1BQ9UPS6 1966 aaKnown RBP6.22□□□□□ -1.41
SPTBN1-206ENST00000602898 ABCA9Q8IUA7 1624 aa6.22□□□□□ -1.41
SPTBN1-206ENST00000602898 DNAJA1P31689 397 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms