RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 MAPK8IP3Q9UPT6 1336 aa19.03■□□□□ 0.64
USE1-210ENST00000601662 NFATC2IPQ8NCF5 419 aa19.03■□□□□ 0.64
USE1-210ENST00000601662 PLEKHF1Q96S99 279 aa19.03■□□□□ 0.64
USE1-210ENST00000601662 ATG3Q9NT62 314 aa19.03■□□□□ 0.64
USE1-210ENST00000601662 PHACTR3Q96KR7 559 aa19.02■□□□□ 0.64
USE1-210ENST00000601662 TFCP2L1Q9NZI6 479 aa19.02■□□□□ 0.64
USE1-210ENST00000601662 RNMTO43148 476 aaKnown RBP19.01■□□□□ 0.63
USE1-210ENST00000601662 ZBTB7AO95365 584 aa19.01■□□□□ 0.63
USE1-210ENST00000601662 CCDC146Q8IYE0 955 aa19.01■□□□□ 0.63
USE1-210ENST00000601662 GAS2L2Q8NHY3 880 aa19.01■□□□□ 0.63
USE1-210ENST00000601662 AKT1S1Q96B36 256 aa19.01■□□□□ 0.63
USE1-210ENST00000601662 RBM42Q9BTD8 480 aaKnown RBP19.01■□□□□ 0.63
USE1-210ENST00000601662 LOC102724428A0A0B4J2F2 783 aa19■□□□□ 0.63
USE1-210ENST00000601662 SIK1P57059 783 aa19■□□□□ 0.63
USE1-210ENST00000601662 NCBP3Q53F19 620 aaKnown RBP19■□□□□ 0.63
USE1-210ENST00000601662 ATF5Q9Y2D1 282 aaPredicted RBP19■□□□□ 0.63
USE1-210ENST00000601662 LY75O60449 1722 aa19■□□□□ 0.63
USE1-210ENST00000601662 ATP6V1AP38606 617 aa18.99■□□□□ 0.63
USE1-210ENST00000601662 APAF1O14727 1248 aa18.98■□□□□ 0.63
USE1-210ENST00000601662 MSH5O43196 834 aa18.98■□□□□ 0.63
USE1-210ENST00000601662 HNRNPUQ00839 825 aaKnown RBP eCLIP18.98■□□□□ 0.63
USE1-210ENST00000601662 SLC52A2Q9HAB3 445 aa18.98■□□□□ 0.63
USE1-210ENST00000601662 SPON1Q9HCB6 807 aa18.98■□□□□ 0.63
USE1-210ENST00000601662 GNAT3A8MTJ3 354 aa18.97■□□□□ 0.63
USE1-210ENST00000601662 PTCD1O75127 700 aaKnown RBP18.97■□□□□ 0.63
USE1-210ENST00000601662 PAPPAQ13219 1627 aa18.96■□□□□ 0.63
USE1-210ENST00000601662 MAP3K5Q99683 1374 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 TMPOP42166 694 aaKnown RBP18.95■□□□□ 0.62
USE1-210ENST00000601662 ITPK1Q13572 414 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 NFE2L2Q16236 605 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 LINC00116Q8NCU8 138 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 IL17REQ8NFR9 667 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 AK7Q96M32 723 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 PNPLA7Q6ZV29 1317 aa18.95■□□□□ 0.62
USE1-210ENST00000601662 HMGB2P26583 209 aaKnown RBP18.94■□□□□ 0.62
USE1-210ENST00000601662 SLC39A6Q13433 755 aa18.94■□□□□ 0.62
USE1-210ENST00000601662 YTHDC1Q96MU7 727 aaKnown RBP18.94■□□□□ 0.62
USE1-210ENST00000601662 SLC4A9Q96Q91 983 aa18.94■□□□□ 0.62
USE1-210ENST00000601662 PPP1R1BQ9UD71 204 aaPredicted RBP18.94■□□□□ 0.62
USE1-210ENST00000601662 SCN11AQ9UI33 1791 aa18.93■□□□□ 0.62
USE1-210ENST00000601662 TEFQ10587 303 aa18.93■□□□□ 0.62
USE1-210ENST00000601662 SMIM5Q71RC9 77 aa18.93■□□□□ 0.62
USE1-210ENST00000601662 PHF14O94880 888 aa18.92■□□□□ 0.62
USE1-210ENST00000601662 RIPK4P57078 832 aa18.92■□□□□ 0.62
USE1-210ENST00000601662 LMOD3Q0VAK6 560 aa18.92■□□□□ 0.62
USE1-210ENST00000601662 CCDC27Q2M243 656 aa18.92■□□□□ 0.62
USE1-210ENST00000601662 COL23A1Q86Y22 540 aaPredicted RBP18.92■□□□□ 0.62
USE1-210ENST00000601662 RTF1Q92541 710 aaKnown RBP18.92■□□□□ 0.62
USE1-210ENST00000601662 MTFR1LQ9H019 292 aa18.92■□□□□ 0.62
USE1-210ENST00000601662 CASZ1Q86V15 1759 aa18.91■□□□□ 0.62
USE1-210ENST00000601662 LRP5O75197 1615 aa18.9■□□□□ 0.62
USE1-210ENST00000601662 C5P01031 1676 aa18.9■□□□□ 0.62
USE1-210ENST00000601662 HTATSF1O43719 755 aaKnown RBP18.9■□□□□ 0.62
USE1-210ENST00000601662 DCTN1Q14203 1278 aa18.9■□□□□ 0.62
USE1-210ENST00000601662 NEUROD2Q15784 382 aa18.9■□□□□ 0.62
USE1-210ENST00000601662 MCM10Q7L590 875 aa18.9■□□□□ 0.62
USE1-210ENST00000601662 GNPATO15228 680 aa18.89■□□□□ 0.61
USE1-210ENST00000601662 AMIGO3Q86WK7 504 aa18.89■□□□□ 0.61
USE1-210ENST00000601662 RRP7AQ9Y3A4 280 aaKnown RBP18.89■□□□□ 0.61
USE1-210ENST00000601662 ZBED9Q6R2W3 1325 aa18.89■□□□□ 0.61
USE1-210ENST00000601662 TAF1LQ8IZX4 1826 aa18.88■□□□□ 0.61
USE1-210ENST00000601662 TTC5Q8N0Z6 440 aa18.88■□□□□ 0.61
USE1-210ENST00000601662 SLC16A10Q8TF71 515 aa18.88■□□□□ 0.61
USE1-210ENST00000601662 SALL2Q9Y467 1007 aaPredicted RBP18.88■□□□□ 0.61
USE1-210ENST00000601662 VIRMAQ69YN4 1812 aaKnown RBP18.88■□□□□ 0.61
USE1-210ENST00000601662 C4BP0C0L5 1744 aa18.87■□□□□ 0.61
USE1-210ENST00000601662 PTGER2P43116 358 aa18.87■□□□□ 0.61
USE1-210ENST00000601662 MSL1Q68DK7 614 aa18.87■□□□□ 0.61
USE1-210ENST00000601662 FLAD1Q8NFF5 587 aa18.87■□□□□ 0.61
USE1-210ENST00000601662 TUBGCP6Q96RT7 1819 aa18.86■□□□□ 0.61
USE1-210ENST00000601662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.86■□□□□ 0.61
USE1-210ENST00000601662 CALD1Q05682 793 aaKnown RBP18.86■□□□□ 0.61
USE1-210ENST00000601662 WDR63Q8IWG1 891 aa18.86■□□□□ 0.61
USE1-210ENST00000601662 WWC1Q8IX03 1113 aa18.86■□□□□ 0.61
USE1-210ENST00000601662 DNAJC10Q8IXB1 793 aa18.86■□□□□ 0.61
USE1-210ENST00000601662 MRC1P22897 1456 aa18.85■□□□□ 0.61
USE1-210ENST00000601662 BTBD11A6QL63 1104 aa18.85■□□□□ 0.61
USE1-210ENST00000601662 POLD1P28340 1107 aa18.84■□□□□ 0.61
USE1-210ENST00000601662 TRIM35Q9UPQ4 493 aa18.84■□□□□ 0.61
USE1-210ENST00000601662 RTCBQ9Y3I0 505 aaKnown RBP18.84■□□□□ 0.61
USE1-210ENST00000601662 CEMIPQ8WUJ3 1361 aa18.83■□□□□ 0.61
USE1-210ENST00000601662 ADAMTS7Q9UKP4 1686 aa18.83■□□□□ 0.61
USE1-210ENST00000601662 SENP3-EIF4A1A0A087X0R7 540 aa18.83■□□□□ 0.6
USE1-210ENST00000601662 KCNQ3O43525 872 aa18.83■□□□□ 0.6
USE1-210ENST00000601662 SSFA2P28290 1259 aa18.83■□□□□ 0.6
USE1-210ENST00000601662 CRKLP46109 303 aaKnown RBP18.83■□□□□ 0.6
USE1-210ENST00000601662 ZNF790Q6PG37 636 aa18.83■□□□□ 0.6
USE1-210ENST00000601662 TRAPPC3LQ5T215 181 aa18.82■□□□□ 0.6
USE1-210ENST00000601662 RC3H1Q5TC82 1133 aaKnown RBP18.82■□□□□ 0.6
USE1-210ENST00000601662 KLHL34Q8N239 644 aa18.82■□□□□ 0.6
USE1-210ENST00000601662 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
USE1-210ENST00000601662 ARXQ96QS3 562 aa18.82■□□□□ 0.6
USE1-210ENST00000601662 SGIP1Q9BQI5 828 aa18.82■□□□□ 0.6
USE1-210ENST00000601662 THUMPD2Q9BTF0 503 aaKnown RBP18.82■□□□□ 0.6
USE1-210ENST00000601662 ZNF521Q96K83 1311 aa18.81■□□□□ 0.6
USE1-210ENST00000601662 CNTNAP4Q9C0A0 1308 aa18.81■□□□□ 0.6
USE1-210ENST00000601662 QSER1Q2KHR3 1735 aa18.81■□□□□ 0.6
USE1-210ENST00000601662 RPS6KA4O75676 772 aa18.81■□□□□ 0.6
USE1-210ENST00000601662 GOLGA2Q08379 1002 aa18.81■□□□□ 0.6
USE1-210ENST00000601662 MIS18AQ9NYP9 233 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms