RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	KCNQ4	P56696	695 aa		11.81	□□□□□ -0.52
SSBP4-208	ENST00000600628	PHACTR3	Q96KR7	559 aa		11.81	□□□□□ -0.52
SSBP4-208	ENST00000600628	LGR6	Q9HBX8	967 aa		11.81	□□□□□ -0.52
SSBP4-208	ENST00000600628	SPON1	Q9HCB6	807 aa		11.81	□□□□□ -0.52
SSBP4-208	ENST00000600628	CCNL1	Q9UK58	526 aa	Predicted RBP	11.81	□□□□□ -0.52
SSBP4-208	ENST00000600628	DLG5	Q8TDM6	1919 aa		11.81	□□□□□ -0.52
SSBP4-208	ENST00000600628	TJP1	Q07157	1748 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	LOC102724428	A0A0B4J2F2	783 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	RNMT	O43148	476 aa	Known RBP	11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	PTGER2	P43116	358 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	SIK1	P57059	783 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	PLEKHF1	Q96S99	279 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	PNPLA7	Q6ZV29	1317 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	KCP	Q6ZWJ8	1503 aa		11.8	□□□□□ -0.52
SSBP4-208	ENST00000600628	HMGB2	P26583	209 aa	Known RBP	11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	ITPK1	Q13572	414 aa		11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	CNGB1	Q14028	1251 aa	Predicted RBP	11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	C1orf141	Q5JVX7	400 aa		11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	IL17RE	Q8NFR9	667 aa		11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	SLC52A2	Q9HAB3	445 aa		11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	NUDC	Q9Y266	331 aa		11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	MAP3K5	Q99683	1374 aa		11.79	□□□□□ -0.52
SSBP4-208	ENST00000600628	U2SURP	O15042	1029 aa	Known RBP	11.78	□□□□□ -0.52
SSBP4-208	ENST00000600628	PRKAR2B	P31323	418 aa		11.78	□□□□□ -0.52
SSBP4-208	ENST00000600628	AMIGO3	Q86WK7	504 aa		11.78	□□□□□ -0.52
SSBP4-208	ENST00000600628	NFATC2IP	Q8NCF5	419 aa		11.78	□□□□□ -0.52
SSBP4-208	ENST00000600628	GAS2L2	Q8NHY3	880 aa		11.78	□□□□□ -0.52
SSBP4-208	ENST00000600628	ZBTB7A	O95365	584 aa		11.77	□□□□□ -0.53
SSBP4-208	ENST00000600628	CABP4	P57796	275 aa		11.77	□□□□□ -0.53
SSBP4-208	ENST00000600628	LINC00116	Q8NCU8	138 aa		11.77	□□□□□ -0.53
SSBP4-208	ENST00000600628	SLC16A10	Q8TF71	515 aa		11.77	□□□□□ -0.53
SSBP4-208	ENST00000600628	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.76	□□□□□ -0.53
SSBP4-208	ENST00000600628	GNAT3	A8MTJ3	354 aa		11.76	□□□□□ -0.53
SSBP4-208	ENST00000600628	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.76	□□□□□ -0.53
SSBP4-208	ENST00000600628	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
SSBP4-208	ENST00000600628	RC3H1	Q5TC82	1133 aa	Known RBP	11.76	□□□□□ -0.53
SSBP4-208	ENST00000600628	MTFR1L	Q9H019	292 aa		11.76	□□□□□ -0.53
SSBP4-208	ENST00000600628	HTATSF1	O43719	755 aa	Known RBP	11.75	□□□□□ -0.53
SSBP4-208	ENST00000600628	TFCP2L1	Q9NZI6	479 aa		11.75	□□□□□ -0.53
SSBP4-208	ENST00000600628	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.75	□□□□□ -0.53
SSBP4-208	ENST00000600628	C4A	P0C0L4	1744 aa		11.74	□□□□□ -0.53
SSBP4-208	ENST00000600628	COL23A1	Q86Y22	540 aa	Predicted RBP	11.74	□□□□□ -0.53
SSBP4-208	ENST00000600628	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.74	□□□□□ -0.53
SSBP4-208	ENST00000600628	CNTNAP4	Q9C0A0	1308 aa		11.74	□□□□□ -0.53
SSBP4-208	ENST00000600628	SSFA2	P28290	1259 aa		11.73	□□□□□ -0.53
SSBP4-208	ENST00000600628	ATP6V1A	P38606	617 aa		11.73	□□□□□ -0.53
SSBP4-208	ENST00000600628	VSIG10	Q8N0Z9	540 aa		11.73	□□□□□ -0.53
SSBP4-208	ENST00000600628	KDM3B	Q7LBC6	1761 aa		11.72	□□□□□ -0.53
SSBP4-208	ENST00000600628	FLAD1	Q8NFF5	587 aa		11.72	□□□□□ -0.53
SSBP4-208	ENST00000600628	HEG1	Q9ULI3	1381 aa		11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	PTCD1	O75127	700 aa	Known RBP	11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	RPS6KA4	O75676	772 aa		11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	SLC39A6	Q13433	755 aa		11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	NFE2L2	Q16236	605 aa		11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	INTS5	Q6P9B9	1019 aa	Known RBP	11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	ZNF790	Q6PG37	636 aa		11.7	□□□□□ -0.54
SSBP4-208	ENST00000600628	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.69	□□□□□ -0.54
SSBP4-208	ENST00000600628	CYP19A1	P11511	503 aa	Predicted RBP	11.69	□□□□□ -0.54
SSBP4-208	ENST00000600628	ADRA2B	P18089	450 aa		11.69	□□□□□ -0.54
SSBP4-208	ENST00000600628	ZNF496	Q96IT1	587 aa	Predicted RBP	11.69	□□□□□ -0.54
SSBP4-208	ENST00000600628	RBM42	Q9BTD8	480 aa	Known RBP	11.69	□□□□□ -0.54
SSBP4-208	ENST00000600628	KIF13B	Q9NQT8	1826 aa		11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	CRKL	P46109	303 aa	Known RBP	11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	SMIM5	Q71RC9	77 aa		11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	MCM10	Q7L590	875 aa		11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	AK7	Q96M32	723 aa		11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	ARX	Q96QS3	562 aa		11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	PNN	Q9H307	717 aa	Known RBP	11.68	□□□□□ -0.54
SSBP4-208	ENST00000600628	GNPAT	O15228	680 aa		11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	MSH5	O43196	834 aa		11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	TEF	Q10587	303 aa		11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	DNAJC10	Q8IXB1	793 aa		11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	SYT17	Q9BSW7	474 aa		11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	ADAMTS8	Q9UP79	889 aa		11.67	□□□□□ -0.54
SSBP4-208	ENST00000600628	SOS1	Q07889	1333 aa	Predicted RBP	11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	KCNQ3	O43525	872 aa		11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	POLD1	P28340	1107 aa		11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	TMPO	P42166	694 aa	Known RBP	11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	DCTN1	Q14203	1278 aa		11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	CCDC184	Q52MB2	194 aa		11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	ARHGEF1	Q92888	912 aa	Known RBP	11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	KIAA1551	Q9HCM1	1747 aa		11.66	□□□□□ -0.54
SSBP4-208	ENST00000600628	LAMB4	A4D0S4	1761 aa		11.65	□□□□□ -0.54
SSBP4-208	ENST00000600628	TAF7	Q15545	349 aa	Predicted RBP	11.65	□□□□□ -0.54
SSBP4-208	ENST00000600628	CCDC87	Q9NVE4	849 aa		11.65	□□□□□ -0.54
SSBP4-208	ENST00000600628	RTCB	Q9Y3I0	505 aa	Known RBP	11.65	□□□□□ -0.54
SSBP4-208	ENST00000600628	NRXN2	Q9P2S2	1712 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	BTBD11	A6QL63	1104 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	PHF14	O94880	888 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	GYS1	P13807	737 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	EIF5	P55010	431 aa	Known RBP	11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	TRAPPC3L	Q5T215	181 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	RTF1	Q92541	710 aa	Known RBP	11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	RUNDC1	Q96C34	613 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	FMNL2	Q96PY5	1086 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	BABAM1	Q9NWV8	329 aa		11.64	□□□□□ -0.55
SSBP4-208	ENST00000600628	TRIM35	Q9UPQ4	493 aa		11.64	□□□□□ -0.55

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