RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MLLT1Q03111 559 aaPredicted RBP12.05□□□□□ -0.48
SHKBP1-220ENST00000599716 LINC00116Q8NCU8 138 aa12.05□□□□□ -0.48
SHKBP1-220ENST00000599716 AK7Q96M32 723 aa12.05□□□□□ -0.48
SHKBP1-220ENST00000599716 MAP2P11137 1827 aaKnown RBP12.04□□□□□ -0.48
SHKBP1-220ENST00000599716 CICQ96RK0 1608 aaPredicted RBP12.04□□□□□ -0.48
SHKBP1-220ENST00000599716 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.04□□□□□ -0.48
SHKBP1-220ENST00000599716 ASAP1Q9ULH1 1129 aa12.04□□□□□ -0.48
SHKBP1-220ENST00000599716 ITPK1Q13572 414 aa12.03□□□□□ -0.48
SHKBP1-220ENST00000599716 EYA1Q99502 592 aa12.03□□□□□ -0.48
SHKBP1-220ENST00000599716 PRDM10Q9NQV6 1147 aa12.03□□□□□ -0.48
SHKBP1-220ENST00000599716 IGSF1Q8N6C5 1336 aa12.03□□□□□ -0.48
SHKBP1-220ENST00000599716 ANKRD26Q9UPS8 1709 aa12.02□□□□□ -0.49
SHKBP1-220ENST00000599716 C10orf71Q711Q0 1435 aa12.02□□□□□ -0.49
SHKBP1-220ENST00000599716 LOC102724428A0A0B4J2F2 783 aa12.01□□□□□ -0.49
SHKBP1-220ENST00000599716 GNPATO15228 680 aa12.01□□□□□ -0.49
SHKBP1-220ENST00000599716 SIK1P57059 783 aa12.01□□□□□ -0.49
SHKBP1-220ENST00000599716 TNRC18O15417 2968 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-220ENST00000599716 NCAPD2Q15021 1401 aa12.01□□□□□ -0.49
SHKBP1-220ENST00000599716 SMC1BQ8NDV3 1235 aa12□□□□□ -0.49
SHKBP1-220ENST00000599716 SMARCC1Q92922 1105 aaPredicted RBP12□□□□□ -0.49
SHKBP1-220ENST00000599716 TMOD3Q9NYL9 352 aa12□□□□□ -0.49
SHKBP1-220ENST00000599716 POLKQ9UBT6 870 aa12□□□□□ -0.49
SHKBP1-220ENST00000599716 SPG7Q9UQ90 795 aa12□□□□□ -0.49
SHKBP1-220ENST00000599716 SLC24A1O60721 1099 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 PHKG2P15735 406 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 ATP6V1AP38606 617 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 RGS19P49795 217 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 EIF4A2Q14240 407 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 NKX1-1Q15270 411 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 FLAD1Q8NFF5 587 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 SLC4A9Q96Q91 983 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 ATG3Q9NT62 314 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 KIF24Q5T7B8 1368 aa11.99□□□□□ -0.49
SHKBP1-220ENST00000599716 N4BP2Q86UW6 1770 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-220ENST00000599716 WASHC2AQ641Q2 1341 aa11.98□□□□□ -0.49
SHKBP1-220ENST00000599716 ABHD8Q96I13 439 aa11.98□□□□□ -0.49
SHKBP1-220ENST00000599716 PLEKHG2Q9H7P9 1386 aa11.97□□□□□ -0.49
SHKBP1-220ENST00000599716 MMP10P09238 476 aa11.97□□□□□ -0.49
SHKBP1-220ENST00000599716 SSFA2P28290 1259 aa11.97□□□□□ -0.49
SHKBP1-220ENST00000599716 CDCA8Q53HL2 280 aa11.97□□□□□ -0.49
SHKBP1-220ENST00000599716 RBM42Q9BTD8 480 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-220ENST00000599716 IFNL2Q8IZJ0 200 aa11.96□□□□□ -0.49
SHKBP1-220ENST00000599716 KIAA1551Q9HCM1 1747 aa11.96□□□□□ -0.49
SHKBP1-220ENST00000599716 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
SHKBP1-220ENST00000599716 KDM2BQ8NHM5 1336 aa11.95□□□□□ -0.5
SHKBP1-220ENST00000599716 A0A0G2JLW4 131 aa11.95□□□□□ -0.5
SHKBP1-220ENST00000599716 FOXN1O15353 648 aa11.95□□□□□ -0.5
SHKBP1-220ENST00000599716 AEBP1Q8IUX7 1158 aa11.95□□□□□ -0.5
SHKBP1-220ENST00000599716 KDRP35968 1356 aa11.94□□□□□ -0.5
SHKBP1-220ENST00000599716 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
SHKBP1-220ENST00000599716 PCGF6Q9BYE7 350 aa11.94□□□□□ -0.5
SHKBP1-220ENST00000599716 CUL9Q8IWT3 2517 aa11.94□□□□□ -0.5
SHKBP1-220ENST00000599716 MYH14Q7Z406 1995 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-220ENST00000599716 KDM6AO15550 1401 aaPredicted RBP11.94□□□□□ -0.5
SHKBP1-220ENST00000599716 CTCFP49711 727 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-220ENST00000599716 ARHGEF1Q92888 912 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-220ENST00000599716 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHKBP1-220ENST00000599716 BCS1LQ9Y276 419 aa11.93□□□□□ -0.5
SHKBP1-220ENST00000599716 COL5A3P25940 1745 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-220ENST00000599716 C4AP0C0L4 1744 aa11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 PTCD1O75127 700 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 TRAPPC3LQ5T215 181 aa11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 ZNF530Q6P9A1 599 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 PANK3Q9H999 370 aa11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 SRP68Q9UHB9 627 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 RTCBQ9Y3I0 505 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-220ENST00000599716 KIF13BQ9NQT8 1826 aa11.91□□□□□ -0.5
SHKBP1-220ENST00000599716 HSPA5P11021 654 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-220ENST00000599716 GYS1P13807 737 aa11.91□□□□□ -0.5
SHKBP1-220ENST00000599716 DPEP1P16444 411 aa11.91□□□□□ -0.5
SHKBP1-220ENST00000599716 KCPQ6ZWJ8 1503 aa11.91□□□□□ -0.5
SHKBP1-220ENST00000599716 CABP4P57796 275 aa11.9□□□□□ -0.5
SHKBP1-220ENST00000599716 AIDAQ96BJ3 306 aa11.9□□□□□ -0.5
SHKBP1-220ENST00000599716 FCHSD2O94868 740 aa11.89□□□□□ -0.51
SHKBP1-220ENST00000599716 ARHGAP27Q6ZUM4 889 aa11.89□□□□□ -0.51
SHKBP1-220ENST00000599716 RNF39Q9H2S5 420 aa11.89□□□□□ -0.51
SHKBP1-220ENST00000599716 RRAGCQ9HB90 399 aa11.89□□□□□ -0.51
SHKBP1-220ENST00000599716 A0A0C4DFX4 3053 aa11.89□□□□□ -0.51
SHKBP1-220ENST00000599716 TJP1Q07157 1748 aa11.89□□□□□ -0.51
SHKBP1-220ENST00000599716 ERVV-2B6SEH9 535 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 RFC4P35249 363 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 MTHFSP49914 203 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 FKBP8Q14318 412 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 PLEKHO1Q53GL0 409 aaPredicted RBP11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 C9orf131Q5VYM1 1079 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 SULT6B1Q6IMI4 303 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 NFATC2IPQ8NCF5 419 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 DCAF5Q96JK2 942 aa11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 BRCA1P38398 1863 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-220ENST00000599716 CNTNAP4Q9C0A0 1308 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 CCDC85CA6NKD9 419 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 RPS6KA4O75676 772 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 KCNA3P22001 575 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 CRKLP46109 303 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 DDR1Q08345 913 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 MORC1Q86VD1 984 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 NLGN1Q8N2Q7 840 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 PARP3Q9Y6F1 533 aa11.87□□□□□ -0.51
SHKBP1-220ENST00000599716 HMGB2P26583 209 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-220ENST00000599716 CHRNA5P30532 468 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms