RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 C1orf141Q5JVX7 400 aa24.14■■□□□ 1.45
LIG1-216ENST00000598938 GAS2L2Q8NHY3 880 aa24.14■■□□□ 1.45
LIG1-216ENST00000598938 ADAMTS8Q9UP79 889 aa24.14■■□□□ 1.45
LIG1-216ENST00000598938 TOGARAM1Q9Y4F4 1720 aa24.14■■□□□ 1.45
LIG1-216ENST00000598938 AKAP4Q5JQC9 854 aa24.13■■□□□ 1.45
LIG1-216ENST00000598938 PNISRQ8TF01 805 aaKnown RBP24.13■■□□□ 1.45
LIG1-216ENST00000598938 HSP90AB1P08238 724 aaKnown RBP24.12■■□□□ 1.45
LIG1-216ENST00000598938 POLD1P28340 1107 aa24.12■■□□□ 1.45
LIG1-216ENST00000598938 KDM6AO15550 1401 aaPredicted RBP24.11■■□□□ 1.45
LIG1-216ENST00000598938 SENP3-EIF4A1A0A087X0R7 540 aa24.11■■□□□ 1.45
LIG1-216ENST00000598938 GPR162Q16538 588 aa24.11■■□□□ 1.45
LIG1-216ENST00000598938 DCAF5Q96JK2 942 aa24.11■■□□□ 1.45
LIG1-216ENST00000598938 PNPLA7Q6ZV29 1317 aa24.1■■□□□ 1.45
LIG1-216ENST00000598938 ADAMTS7Q9UKP4 1686 aa24.09■■□□□ 1.45
LIG1-216ENST00000598938 CCER2I3L3R5 266 aa24.09■■□□□ 1.45
LIG1-216ENST00000598938 NEFMP07197 916 aa24.09■■□□□ 1.45
LIG1-216ENST00000598938 PRIM1P49642 420 aaKnown RBP24.09■■□□□ 1.45
LIG1-216ENST00000598938 MAPK8IP3Q9UPT6 1336 aa24.08■■□□□ 1.44
LIG1-216ENST00000598938 MPRIPQ6WCQ1 1025 aa24.07■■□□□ 1.44
LIG1-216ENST00000598938 RUNDC1Q96C34 613 aa24.07■■□□□ 1.44
LIG1-216ENST00000598938 SCN11AQ9UI33 1791 aa24.06■■□□□ 1.44
LIG1-216ENST00000598938 GNAT3A8MTJ3 354 aa24.06■■□□□ 1.44
LIG1-216ENST00000598938 CCDC146Q8IYE0 955 aa24.06■■□□□ 1.44
LIG1-216ENST00000598938 MIER1Q8N108 512 aa24.06■■□□□ 1.44
LIG1-216ENST00000598938 ITGB4P16144 1822 aa24.05■■□□□ 1.44
LIG1-216ENST00000598938 ERVV-2B6SEH9 535 aa24.05■■□□□ 1.44
LIG1-216ENST00000598938 NFE2L2Q16236 605 aa24.05■■□□□ 1.44
LIG1-216ENST00000598938 SYTL4Q96C24 671 aaPredicted RBP24.05■■□□□ 1.44
LIG1-216ENST00000598938 TFCP2L1Q9NZI6 479 aa24.05■■□□□ 1.44
LIG1-216ENST00000598938 RNMTO43148 476 aaKnown RBP24.04■■□□□ 1.44
LIG1-216ENST00000598938 GOLGB1Q14789 3259 aaKnown RBP24.04■■□□□ 1.44
LIG1-216ENST00000598938 MRC1P22897 1456 aa24.03■■□□□ 1.44
LIG1-216ENST00000598938 GIGYF1O75420 1035 aaPredicted RBP24.03■■□□□ 1.44
LIG1-216ENST00000598938 LGR6Q9HBX8 967 aa24.03■■□□□ 1.44
LIG1-216ENST00000598938 HTATSF1O43719 755 aaKnown RBP24.01■■□□□ 1.43
LIG1-216ENST00000598938 HMGB2P26583 209 aaKnown RBP24.01■■□□□ 1.43
LIG1-216ENST00000598938 KLHL34Q8N239 644 aa24.01■■□□□ 1.43
LIG1-216ENST00000598938 PIGBQ92521 554 aa24.01■■□□□ 1.43
LIG1-216ENST00000598938 TMOD3Q9NYL9 352 aa24.01■■□□□ 1.43
LIG1-216ENST00000598938 VIRMAQ69YN4 1812 aaKnown RBP24■■□□□ 1.43
LIG1-216ENST00000598938 C5P01031 1676 aa24■■□□□ 1.43
LIG1-216ENST00000598938 TMPOP42166 694 aaKnown RBP24■■□□□ 1.43
LIG1-216ENST00000598938 IL17REQ8NFR9 667 aa24■■□□□ 1.43
LIG1-216ENST00000598938 CEMIPQ8WUJ3 1361 aa24■■□□□ 1.43
LIG1-216ENST00000598938 DLG5Q8TDM6 1919 aa24■■□□□ 1.43
LIG1-216ENST00000598938 GRIN3BO60391 1043 aa23.99■■□□□ 1.43
LIG1-216ENST00000598938 CABP4P57796 275 aa23.99■■□□□ 1.43
LIG1-216ENST00000598938 SLC52A2Q9HAB3 445 aa23.98■■□□□ 1.43
LIG1-216ENST00000598938 FAM9BQ8IZU0 186 aa23.97■■□□□ 1.43
LIG1-216ENST00000598938 RTF1Q92541 710 aaKnown RBP23.97■■□□□ 1.43
LIG1-216ENST00000598938 CCNL1Q9UK58 526 aaPredicted RBP23.97■■□□□ 1.43
LIG1-216ENST00000598938 TAF1LQ8IZX4 1826 aa23.96■■□□□ 1.43
LIG1-216ENST00000598938 RIPK4P57078 832 aa23.96■■□□□ 1.43
LIG1-216ENST00000598938 PELP1Q8IZL8 1130 aaKnown RBP23.96■■□□□ 1.43
LIG1-216ENST00000598938 NFATC2IPQ8NCF5 419 aa23.96■■□□□ 1.43
LIG1-216ENST00000598938 NLGN2Q8NFZ4 835 aa23.96■■□□□ 1.43
LIG1-216ENST00000598938 MCM10Q7L590 875 aa23.95■■□□□ 1.42
LIG1-216ENST00000598938 RRP7AQ9Y3A4 280 aaKnown RBP23.95■■□□□ 1.42
LIG1-216ENST00000598938 SIPA1L3O60292 1781 aaPredicted RBP23.95■■□□□ 1.42
LIG1-216ENST00000598938 APAF1O14727 1248 aa23.94■■□□□ 1.42
LIG1-216ENST00000598938 DCTN1Q14203 1278 aa23.94■■□□□ 1.42
LIG1-216ENST00000598938 KCNQ4P56696 695 aa23.93■■□□□ 1.42
LIG1-216ENST00000598938 PALLDQ8WX93 1383 aa23.92■■□□□ 1.42
LIG1-216ENST00000598938 LMOD3Q0VAK6 560 aa23.92■■□□□ 1.42
LIG1-216ENST00000598938 TEFQ10587 303 aa23.92■■□□□ 1.42
LIG1-216ENST00000598938 SMARCC1Q92922 1105 aaPredicted RBP23.92■■□□□ 1.42
LIG1-216ENST00000598938 ATG3Q9NT62 314 aa23.92■■□□□ 1.42
LIG1-216ENST00000598938 ASAP1Q9ULH1 1129 aa23.92■■□□□ 1.42
LIG1-216ENST00000598938 NEUROD2Q15784 382 aa23.91■■□□□ 1.42
LIG1-216ENST00000598938 TRIM35Q9UPQ4 493 aa23.91■■□□□ 1.42
LIG1-216ENST00000598938 COL23A1Q86Y22 540 aaPredicted RBP23.9■■□□□ 1.42
LIG1-216ENST00000598938 FLAD1Q8NFF5 587 aa23.9■■□□□ 1.42
LIG1-216ENST00000598938 YBX3P16989 372 aaKnown RBP eCLIP23.89■■□□□ 1.41
LIG1-216ENST00000598938 CD2APQ9Y5K6 639 aa23.88■■□□□ 1.41
LIG1-216ENST00000598938 CEP350Q5VT06 3117 aa23.88■■□□□ 1.41
LIG1-216ENST00000598938 MSH5O43196 834 aa23.87■■□□□ 1.41
LIG1-216ENST00000598938 NCBP3Q53F19 620 aaKnown RBP23.87■■□□□ 1.41
LIG1-216ENST00000598938 THUMPD2Q9BTF0 503 aaKnown RBP23.87■■□□□ 1.41
LIG1-216ENST00000598938 C4BP0C0L5 1744 aa23.86■■□□□ 1.41
LIG1-216ENST00000598938 ATP10DQ9P241 1426 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 KCPQ6ZWJ8 1503 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 UBR3Q6ZT12 1888 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 UBR2Q8IWV8 1755 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 ZNF831Q5JPB2 1677 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 SLC39A6Q13433 755 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 TAF7Q15545 349 aaPredicted RBP23.84■■□□□ 1.41
LIG1-216ENST00000598938 IFFO2Q5TF58 517 aa23.84■■□□□ 1.41
LIG1-216ENST00000598938 LOC102724428A0A0B4J2F2 783 aa23.83■■□□□ 1.41
LIG1-216ENST00000598938 BTBD11A6QL63 1104 aa23.83■■□□□ 1.41
LIG1-216ENST00000598938 SIK1P57059 783 aa23.83■■□□□ 1.41
LIG1-216ENST00000598938 CCDC27Q2M243 656 aa23.83■■□□□ 1.41
LIG1-216ENST00000598938 ADCY9O60503 1353 aa23.82■■□□□ 1.4
LIG1-216ENST00000598938 ZNF790Q6PG37 636 aa23.82■■□□□ 1.4
LIG1-216ENST00000598938 SLC4A9Q96Q91 983 aa23.81■■□□□ 1.4
LIG1-216ENST00000598938 CICQ96RK0 1608 aaPredicted RBP23.81■■□□□ 1.4
LIG1-216ENST00000598938 PTCD1O75127 700 aaKnown RBP23.8■■□□□ 1.4
LIG1-216ENST00000598938 MSL1Q68DK7 614 aa23.8■■□□□ 1.4
LIG1-216ENST00000598938 RBM42Q9BTD8 480 aaKnown RBP23.8■■□□□ 1.4
LIG1-216ENST00000598938 KDM3BQ7LBC6 1761 aa23.8■■□□□ 1.4
LIG1-216ENST00000598938 TTC5Q8N0Z6 440 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms