RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 NLGN2Q8NFZ4 835 aa14.53□□□□□ -0.08
VRK3-214ENST00000598553 SIPA1L3O60292 1781 aaPredicted RBP14.52□□□□□ -0.08
VRK3-214ENST00000598553 CICQ96RK0 1608 aaPredicted RBP14.52□□□□□ -0.08
VRK3-214ENST00000598553 PLEKHG2Q9H7P9 1386 aa14.52□□□□□ -0.08
VRK3-214ENST00000598553 PHF14O94880 888 aa14.52□□□□□ -0.09
VRK3-214ENST00000598553 PLEKHO1Q53GL0 409 aaPredicted RBP14.52□□□□□ -0.09
VRK3-214ENST00000598553 KLHL34Q8N239 644 aa14.52□□□□□ -0.09
VRK3-214ENST00000598553 KIAA1551Q9HCM1 1747 aa14.52□□□□□ -0.09
VRK3-214ENST00000598553 MRC1P22897 1456 aa14.51□□□□□ -0.09
VRK3-214ENST00000598553 MAP3K5Q99683 1374 aa14.51□□□□□ -0.09
VRK3-214ENST00000598553 NPC1L1Q9UHC9 1359 aa14.51□□□□□ -0.09
VRK3-214ENST00000598553 MSH5O43196 834 aa14.51□□□□□ -0.09
VRK3-214ENST00000598553 SMARCC1Q92922 1105 aaPredicted RBP14.51□□□□□ -0.09
VRK3-214ENST00000598553 UBR2Q8IWV8 1755 aa14.51□□□□□ -0.09
VRK3-214ENST00000598553 SLC16A10Q8TF71 515 aa14.5□□□□□ -0.09
VRK3-214ENST00000598553 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.49□□□□□ -0.09
VRK3-214ENST00000598553 ATP6V1AP38606 617 aa14.49□□□□□ -0.09
VRK3-214ENST00000598553 DCAF5Q96JK2 942 aa14.49□□□□□ -0.09
VRK3-214ENST00000598553 LGR6Q9HBX8 967 aa14.49□□□□□ -0.09
VRK3-214ENST00000598553 KCPQ6ZWJ8 1503 aa14.48□□□□□ -0.09
VRK3-214ENST00000598553 MTHFSDQ2M296 383 aaKnown RBP14.48□□□□□ -0.09
VRK3-214ENST00000598553 AK7Q96M32 723 aa14.48□□□□□ -0.09
VRK3-214ENST00000598553 ERVV-2B6SEH9 535 aa14.47□□□□□ -0.09
VRK3-214ENST00000598553 GNPATO15228 680 aa14.47□□□□□ -0.09
VRK3-214ENST00000598553 DIAPH1O60610 1272 aaKnown RBP14.47□□□□□ -0.09
VRK3-214ENST00000598553 CABP4P57796 275 aa14.47□□□□□ -0.09
VRK3-214ENST00000598553 AMOTQ4VCS5 1084 aa14.47□□□□□ -0.09
VRK3-214ENST00000598553 NFATC2IPQ8NCF5 419 aa14.47□□□□□ -0.09
VRK3-214ENST00000598553 RBM42Q9BTD8 480 aaKnown RBP14.47□□□□□ -0.09
VRK3-214ENST00000598553 KIF13BQ9NQT8 1826 aa14.47□□□□□ -0.09
VRK3-214ENST00000598553 N4BP2Q86UW6 1770 aaPredicted RBP14.47□□□□□ -0.09
VRK3-214ENST00000598553 YY1P25490 414 aa14.46□□□□□ -0.09
VRK3-214ENST00000598553 POLD1P28340 1107 aa14.46□□□□□ -0.09
VRK3-214ENST00000598553 DLG5Q8TDM6 1919 aa14.46□□□□□ -0.09
VRK3-214ENST00000598553 HSP90AB1P08238 724 aaKnown RBP14.45□□□□□ -0.1
VRK3-214ENST00000598553 C1orf141Q5JVX7 400 aa14.45□□□□□ -0.1
VRK3-214ENST00000598553 RNMTO43148 476 aaKnown RBP14.44□□□□□ -0.1
VRK3-214ENST00000598553 PTCD1O75127 700 aaKnown RBP14.44□□□□□ -0.1
VRK3-214ENST00000598553 YBX3P16989 372 aaKnown RBP eCLIP14.44□□□□□ -0.1
VRK3-214ENST00000598553 SLC39A6Q13433 755 aa14.44□□□□□ -0.1
VRK3-214ENST00000598553 U2SURPO15042 1029 aaKnown RBP14.43□□□□□ -0.1
VRK3-214ENST00000598553 SSFA2P28290 1259 aa14.43□□□□□ -0.1
VRK3-214ENST00000598553 PPP2R1AP30153 589 aa14.43□□□□□ -0.1
VRK3-214ENST00000598553 AKAP4Q5JQC9 854 aa14.43□□□□□ -0.1
VRK3-214ENST00000598553 WWC3Q9ULE0 1092 aa14.43□□□□□ -0.1
VRK3-214ENST00000598553 BRCA1P38398 1863 aaKnown RBP14.43□□□□□ -0.1
VRK3-214ENST00000598553 PHACTR3Q96KR7 559 aa14.42□□□□□ -0.1
VRK3-214ENST00000598553 SLC52A2Q9HAB3 445 aa14.42□□□□□ -0.1
VRK3-214ENST00000598553 CNTNAP4Q9C0A0 1308 aa14.41□□□□□ -0.1
VRK3-214ENST00000598553 DNAJC10Q8IXB1 793 aa14.41□□□□□ -0.1
VRK3-214ENST00000598553 PELP1Q8IZL8 1130 aaKnown RBP14.41□□□□□ -0.1
VRK3-214ENST00000598553 AFDNP55196 1824 aaKnown RBP14.41□□□□□ -0.1
VRK3-214ENST00000598553 FLAD1Q8NFF5 587 aa14.4□□□□□ -0.1
VRK3-214ENST00000598553 ARHGEF1Q92888 912 aaKnown RBP14.4□□□□□ -0.1
VRK3-214ENST00000598553 RSPH6AQ9H0K4 717 aa14.4□□□□□ -0.1
VRK3-214ENST00000598553 CRKLP46109 303 aaKnown RBP14.39□□□□□ -0.11
VRK3-214ENST00000598553 INTS5Q6P9B9 1019 aaKnown RBP14.39□□□□□ -0.11
VRK3-214ENST00000598553 IL17REQ8NFR9 667 aa14.39□□□□□ -0.11
VRK3-214ENST00000598553 SRP68Q9UHB9 627 aaKnown RBP14.39□□□□□ -0.11
VRK3-214ENST00000598553 PRKAR2BP31323 418 aa14.38□□□□□ -0.11
VRK3-214ENST00000598553 GPR162Q16538 588 aa14.38□□□□□ -0.11
VRK3-214ENST00000598553 RTCBQ9Y3I0 505 aaKnown RBP14.38□□□□□ -0.11
VRK3-214ENST00000598553 KCNQ3O43525 872 aa14.37□□□□□ -0.11
VRK3-214ENST00000598553 RPS6KA4O75676 772 aa14.37□□□□□ -0.11
VRK3-214ENST00000598553 MMP10P09238 476 aa14.37□□□□□ -0.11
VRK3-214ENST00000598553 GYS1P13807 737 aa14.37□□□□□ -0.11
VRK3-214ENST00000598553 HMGB2P26583 209 aaKnown RBP14.37□□□□□ -0.11
VRK3-214ENST00000598553 RC3H1Q5TC82 1133 aaKnown RBP14.37□□□□□ -0.11
VRK3-214ENST00000598553 PXDNLA1KZ92 1463 aa14.37□□□□□ -0.11
VRK3-214ENST00000598553 C10orf71Q711Q0 1435 aa14.36□□□□□ -0.11
VRK3-214ENST00000598553 DCAF8L1A6NGE4 600 aa14.35□□□□□ -0.11
VRK3-214ENST00000598553 TRAPPC3LQ5T215 181 aa14.35□□□□□ -0.11
VRK3-214ENST00000598553 ZNF784Q8NCA9 323 aaPredicted RBP14.35□□□□□ -0.11
VRK3-214ENST00000598553 ZBTB1Q9Y2K1 713 aa14.35□□□□□ -0.11
VRK3-214ENST00000598553 CD2APQ9Y5K6 639 aa14.35□□□□□ -0.11
VRK3-214ENST00000598553 SCN7AQ01118 1682 aa14.35□□□□□ -0.11
VRK3-214ENST00000598553 NRXN2Q9P2S2 1712 aa14.35□□□□□ -0.11
VRK3-214ENST00000598553 CEMIPQ8WUJ3 1361 aa14.34□□□□□ -0.11
VRK3-214ENST00000598553 UTRNP46939 3433 aa14.34□□□□□ -0.11
VRK3-214ENST00000598553 CYP19A1P11511 503 aaPredicted RBP14.34□□□□□ -0.11
VRK3-214ENST00000598553 DDR1Q08345 913 aa14.34□□□□□ -0.11
VRK3-214ENST00000598553 SOS1Q07889 1333 aaPredicted RBP14.34□□□□□ -0.11
VRK3-214ENST00000598553 BCORQ6W2J9 1755 aa14.34□□□□□ -0.11
VRK3-214ENST00000598553 KDM3BQ7LBC6 1761 aa14.33□□□□□ -0.12
VRK3-214ENST00000598553 DCTN1Q14203 1278 aa14.33□□□□□ -0.12
VRK3-214ENST00000598553 FKBP8Q14318 412 aa14.33□□□□□ -0.12
VRK3-214ENST00000598553 ZNF496Q96IT1 587 aaPredicted RBP14.33□□□□□ -0.12
VRK3-214ENST00000598553 USP42Q9H9J4 1324 aaKnown RBP14.33□□□□□ -0.12
VRK3-214ENST00000598553 ANKRD31Q8N7Z5 1873 aa14.33□□□□□ -0.12
VRK3-214ENST00000598553 ARFGEF1Q9Y6D6 1849 aa14.32□□□□□ -0.12
VRK3-214ENST00000598553 GNAT3A8MTJ3 354 aa14.32□□□□□ -0.12
VRK3-214ENST00000598553 U2AF1L5P0DN76 240 aaPredicted RBP14.32□□□□□ -0.12
VRK3-214ENST00000598553 U2AF1Q01081 240 aaKnown RBP eCLIP14.32□□□□□ -0.12
VRK3-214ENST00000598553 GAS2L2Q8NHY3 880 aa14.32□□□□□ -0.12
VRK3-214ENST00000598553 CCDC87Q9NVE4 849 aa14.32□□□□□ -0.12
VRK3-214ENST00000598553 PRAMEF22A3QJZ6 481 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 ADRA2BP18089 450 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 RFC4P35249 363 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 MCM10Q7L590 875 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 CFAP53Q96M91 514 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms