RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 EXOSC9Q06265 439 aaKnown RBP19.98■□□□□ 0.79
UPF1-206ENST00000598471 MRC1P22897 1456 aa19.97■□□□□ 0.79
UPF1-206ENST00000598471 A0A0G2JS52 829 aa19.96■□□□□ 0.79
UPF1-206ENST00000598471 MYT1Q01538 1121 aa19.96■□□□□ 0.79
UPF1-206ENST00000598471 SLC52A2Q9HAB3 445 aa19.96■□□□□ 0.79
UPF1-206ENST00000598471 VIRMAQ69YN4 1812 aaKnown RBP19.95■□□□□ 0.78
UPF1-206ENST00000598471 ERVV-2B6SEH9 535 aa19.95■□□□□ 0.78
UPF1-206ENST00000598471 SOCS7O14512 581 aa19.95■□□□□ 0.78
UPF1-206ENST00000598471 CABP4P57796 275 aa19.95■□□□□ 0.78
UPF1-206ENST00000598471 BTBD11A6QL63 1104 aa19.94■□□□□ 0.78
UPF1-206ENST00000598471 ZNF428Q96B54 188 aa19.93■□□□□ 0.78
UPF1-206ENST00000598471 MIS18AQ9NYP9 233 aa19.93■□□□□ 0.78
UPF1-206ENST00000598471 SUPT16HQ9Y5B9 1047 aaKnown RBP19.93■□□□□ 0.78
UPF1-206ENST00000598471 THSD7AQ9UPZ6 1657 aa19.93■□□□□ 0.78
UPF1-206ENST00000598471 SIPA1L3O60292 1781 aaPredicted RBP19.92■□□□□ 0.78
UPF1-206ENST00000598471 NEFLP07196 543 aa19.91■□□□□ 0.78
UPF1-206ENST00000598471 TWISTNBQ3B726 338 aaPredicted RBP19.91■□□□□ 0.78
UPF1-206ENST00000598471 KRT27Q7Z3Y8 459 aa19.91■□□□□ 0.78
UPF1-206ENST00000598471 NFATC2IPQ8NCF5 419 aa19.91■□□□□ 0.78
UPF1-206ENST00000598471 SOS1Q07889 1333 aaPredicted RBP19.91■□□□□ 0.78
UPF1-206ENST00000598471 KDM3BQ7LBC6 1761 aa19.9■□□□□ 0.78
UPF1-206ENST00000598471 FAM182BQ5T319 152 aa19.9■□□□□ 0.78
UPF1-206ENST00000598471 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.89■□□□□ 0.77
UPF1-206ENST00000598471 TMOD3Q9NYL9 352 aa19.89■□□□□ 0.77
UPF1-206ENST00000598471 RARSP54136 660 aaKnown RBP19.88■□□□□ 0.77
UPF1-206ENST00000598471 TTC5Q8N0Z6 440 aa19.88■□□□□ 0.77
UPF1-206ENST00000598471 C8orf58Q8NAV2 365 aa19.88■□□□□ 0.77
UPF1-206ENST00000598471 CHMP4AQ9BY43 222 aa19.88■□□□□ 0.77
UPF1-206ENST00000598471 ALDH1L2Q3SY69 923 aa19.87■□□□□ 0.77
UPF1-206ENST00000598471 MARCH10Q8NA82 808 aaPredicted RBP19.87■□□□□ 0.77
UPF1-206ENST00000598471 TOGARAM1Q9Y4F4 1720 aa19.87■□□□□ 0.77
UPF1-206ENST00000598471 RNF123Q5XPI4 1314 aa19.86■□□□□ 0.77
UPF1-206ENST00000598471 ELL2O00472 640 aaPredicted RBP19.86■□□□□ 0.77
UPF1-206ENST00000598471 VAMP4O75379 141 aa19.86■□□□□ 0.77
UPF1-206ENST00000598471 RRP1P56182 461 aaKnown RBP19.86■□□□□ 0.77
UPF1-206ENST00000598471 EIF4A1P60842 406 aaKnown RBP19.86■□□□□ 0.77
UPF1-206ENST00000598471 ZNF790Q6PG37 636 aa19.86■□□□□ 0.77
UPF1-206ENST00000598471 TSPYL6Q8N831 410 aa19.86■□□□□ 0.77
UPF1-206ENST00000598471 UPF1Q92900 1129 aaKnown RBP eCLIP19.86■□□□□ 0.77
UPF1-206ENST00000598471 HOXB7P09629 217 aa19.85■□□□□ 0.77
UPF1-206ENST00000598471 SMC4Q9NTJ3 1288 aa19.85■□□□□ 0.77
UPF1-206ENST00000598471 DOT1LQ8TEK3 1739 aa19.84■□□□□ 0.77
UPF1-206ENST00000598471 CANXP27824 592 aaKnown RBP19.83■□□□□ 0.77
UPF1-206ENST00000598471 KRT24Q2M2I5 525 aa19.83■□□□□ 0.77
UPF1-206ENST00000598471 KCNQ3O43525 872 aa19.82■□□□□ 0.76
UPF1-206ENST00000598471 SLC39A6Q13433 755 aa19.82■□□□□ 0.76
UPF1-206ENST00000598471 SSH1Q8WYL5 1049 aa19.82■□□□□ 0.76
UPF1-206ENST00000598471 SYTL4Q96C24 671 aaPredicted RBP19.82■□□□□ 0.76
UPF1-206ENST00000598471 FMNL2Q96PY5 1086 aa19.82■□□□□ 0.76
UPF1-206ENST00000598471 BRWD3Q6RI45 1802 aa19.81■□□□□ 0.76
UPF1-206ENST00000598471 KIF16BQ96L93 1317 aa19.81■□□□□ 0.76
UPF1-206ENST00000598471 PAPPAQ13219 1627 aa19.81■□□□□ 0.76
UPF1-206ENST00000598471 BCAR3O75815 825 aa19.81■□□□□ 0.76
UPF1-206ENST00000598471 BCL9O00512 1426 aa19.81■□□□□ 0.76
UPF1-206ENST00000598471 PRIM1P49642 420 aaKnown RBP19.8■□□□□ 0.76
UPF1-206ENST00000598471 CCDC30Q5VVM6 783 aa19.8■□□□□ 0.76
UPF1-206ENST00000598471 PIGBQ92521 554 aa19.8■□□□□ 0.76
UPF1-206ENST00000598471 BCL2L13Q9BXK5 485 aa19.8■□□□□ 0.76
UPF1-206ENST00000598471 STK31Q9BXU1 1019 aa19.8■□□□□ 0.76
UPF1-206ENST00000598471 HEG1Q9ULI3 1381 aa19.8■□□□□ 0.76
UPF1-206ENST00000598471 ITGB4P16144 1822 aa19.79■□□□□ 0.76
UPF1-206ENST00000598471 BRPF1P55201 1214 aaPredicted RBP19.78■□□□□ 0.76
UPF1-206ENST00000598471 HDGFL1Q5TGJ6 251 aa19.78■□□□□ 0.76
UPF1-206ENST00000598471 ACSBG1Q96GR2 724 aa19.78■□□□□ 0.76
UPF1-206ENST00000598471 ZNF496Q96IT1 587 aaPredicted RBP19.78■□□□□ 0.76
UPF1-206ENST00000598471 IPO8O15397 1037 aaKnown RBP19.77■□□□□ 0.76
UPF1-206ENST00000598471 GIGYF1O75420 1035 aaPredicted RBP19.77■□□□□ 0.76
UPF1-206ENST00000598471 SNRPA1P09661 255 aaKnown RBP19.77■□□□□ 0.76
UPF1-206ENST00000598471 FRAT1Q92837 279 aaPredicted RBP19.77■□□□□ 0.76
UPF1-206ENST00000598471 UBR2Q8IWV8 1755 aa19.76■□□□□ 0.75
UPF1-206ENST00000598471 MS4A1P11836 297 aa19.76■□□□□ 0.75
UPF1-206ENST00000598471 ZKSCAN2Q63HK3 967 aa19.76■□□□□ 0.75
UPF1-206ENST00000598471 FAM196AQ6ZSG2 479 aa19.76■□□□□ 0.75
UPF1-206ENST00000598471 MRPL50Q8N5N7 158 aaKnown RBP19.76■□□□□ 0.75
UPF1-206ENST00000598471 KCPQ6ZWJ8 1503 aa19.76■□□□□ 0.75
UPF1-206ENST00000598471 ATG3Q9NT62 314 aa19.75■□□□□ 0.75
UPF1-206ENST00000598471 PLIN1O60240 522 aa19.74■□□□□ 0.75
UPF1-206ENST00000598471 EIF2S2P20042 333 aaKnown RBP19.74■□□□□ 0.75
UPF1-206ENST00000598471 SMARCC1Q92922 1105 aaPredicted RBP19.74■□□□□ 0.75
UPF1-206ENST00000598471 ASAP1Q9ULH1 1129 aa19.74■□□□□ 0.75
UPF1-206ENST00000598471 TCERG1O14776 1098 aaKnown RBP19.73■□□□□ 0.75
UPF1-206ENST00000598471 PTCD1O75127 700 aaKnown RBP19.73■□□□□ 0.75
UPF1-206ENST00000598471 TRIM37O94972 964 aa19.73■□□□□ 0.75
UPF1-206ENST00000598471 FKBP8Q14318 412 aa19.73■□□□□ 0.75
UPF1-206ENST00000598471 GTF3C3Q9Y5Q9 886 aa19.73■□□□□ 0.75
UPF1-206ENST00000598471 NHSQ6T4R5 1651 aa19.72■□□□□ 0.75
UPF1-206ENST00000598471 SLC4A2P04920 1241 aa19.72■□□□□ 0.75
UPF1-206ENST00000598471 PDE3AQ14432 1141 aa19.72■□□□□ 0.75
UPF1-206ENST00000598471 VSIG10Q8N0Z9 540 aa19.72■□□□□ 0.75
UPF1-206ENST00000598471 ARHGAP45Q92619 1136 aa19.72■□□□□ 0.75
UPF1-206ENST00000598471 NECTIN2Q92692 538 aa19.72■□□□□ 0.75
UPF1-206ENST00000598471 TEX13AQ9BXU3 409 aaPredicted RBP19.72■□□□□ 0.75
UPF1-206ENST00000598471 NOB1Q9ULX3 412 aaKnown RBP19.72■□□□□ 0.75
UPF1-206ENST00000598471 LAMB4A4D0S4 1761 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 IRX6P78412 446 aaPredicted RBP19.71■□□□□ 0.75
UPF1-206ENST00000598471 ERICH6BQ5W0A0 696 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 ATF7IPQ6VMQ6 1270 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 PTF1AQ7RTS3 328 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 CCDC125Q86Z20 511 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 FTSJ3Q8IY81 847 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms