RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PDGFDQ9GZP0 370 aaPredicted RBP21.62■■□□□ 1.05
TRIM28-213ENST00000598355 ATG3Q9NT62 314 aa21.62■■□□□ 1.05
TRIM28-213ENST00000598355 MAP3K5Q99683 1374 aa21.61■■□□□ 1.05
TRIM28-213ENST00000598355 PRKAR2BP31323 418 aa21.61■■□□□ 1.05
TRIM28-213ENST00000598355 LOC102724428A0A0B4J2F2 783 aa21.6■■□□□ 1.05
TRIM28-213ENST00000598355 FCHSD2O94868 740 aa21.6■■□□□ 1.05
TRIM28-213ENST00000598355 SIK1P57059 783 aa21.6■■□□□ 1.05
TRIM28-213ENST00000598355 GAS2L2Q8NHY3 880 aa21.6■■□□□ 1.05
TRIM28-213ENST00000598355 MYH14Q7Z406 1995 aaKnown RBP21.59■■□□□ 1.05
TRIM28-213ENST00000598355 PNPLA7Q6ZV29 1317 aa21.59■■□□□ 1.05
TRIM28-213ENST00000598355 RNMTO43148 476 aaKnown RBP21.59■■□□□ 1.05
TRIM28-213ENST00000598355 U2AF1L5P0DN76 240 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-213ENST00000598355 HMGB2P26583 209 aaKnown RBP21.59■■□□□ 1.05
TRIM28-213ENST00000598355 CABP4P57796 275 aa21.59■■□□□ 1.05
TRIM28-213ENST00000598355 U2AF1Q01081 240 aaKnown RBP eCLIP21.59■■□□□ 1.055e-13■□□□□ 8.1
TRIM28-213ENST00000598355 KCPQ6ZWJ8 1503 aa21.59■■□□□ 1.05
TRIM28-213ENST00000598355 CEMIPQ8WUJ3 1361 aa21.59■■□□□ 1.05
TRIM28-213ENST00000598355 PHACTR3Q96KR7 559 aa21.58■■□□□ 1.05
TRIM28-213ENST00000598355 PRKRIP1Q9H875 184 aaPredicted RBP21.58■■□□□ 1.05
TRIM28-213ENST00000598355 SLC52A2Q9HAB3 445 aa21.58■■□□□ 1.05
TRIM28-213ENST00000598355 LGR6Q9HBX8 967 aa21.57■■□□□ 1.04
TRIM28-213ENST00000598355 ZNF316A6NFI3 1004 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-213ENST00000598355 NFATC2IPQ8NCF5 419 aa21.56■■□□□ 1.04
TRIM28-213ENST00000598355 SLC4A9Q96Q91 983 aa21.56■■□□□ 1.04
TRIM28-213ENST00000598355 ITPK1Q13572 414 aa21.55■■□□□ 1.04
TRIM28-213ENST00000598355 SPON1Q9HCB6 807 aa21.55■■□□□ 1.04
TRIM28-213ENST00000598355 GNAT3A8MTJ3 354 aa21.54■■□□□ 1.04
TRIM28-213ENST00000598355 LINC00116Q8NCU8 138 aa21.54■■□□□ 1.04
TRIM28-213ENST00000598355 C4AP0C0L4 1744 aa21.54■■□□□ 1.04
TRIM28-213ENST00000598355 PTGER2P43116 358 aa21.53■■□□□ 1.04
TRIM28-213ENST00000598355 PLEKHF1Q96S99 279 aa21.53■■□□□ 1.04
TRIM28-213ENST00000598355 SGIP1Q9BQI5 828 aa21.53■■□□□ 1.04
TRIM28-213ENST00000598355 MTFR1LQ9H019 292 aa21.53■■□□□ 1.04
TRIM28-213ENST00000598355 IL17REQ8NFR9 667 aa21.52■■□□□ 1.04
TRIM28-213ENST00000598355 SLC16A10Q8TF71 515 aa21.52■■□□□ 1.04
TRIM28-213ENST00000598355 TFCP2L1Q9NZI6 479 aa21.52■■□□□ 1.04
TRIM28-213ENST00000598355 ZBTB7AO95365 584 aa21.5■■□□□ 1.03
TRIM28-213ENST00000598355 ATP6V1AP38606 617 aa21.5■■□□□ 1.03
TRIM28-213ENST00000598355 AMIGO3Q86WK7 504 aa21.49■■□□□ 1.03
TRIM28-213ENST00000598355 CNTNAP4Q9C0A0 1308 aa21.49■■□□□ 1.03
TRIM28-213ENST00000598355 KDM3BQ7LBC6 1761 aa21.48■■□□□ 1.03
TRIM28-213ENST00000598355 HTATSF1O43719 755 aaKnown RBP21.47■■□□□ 1.03
TRIM28-213ENST00000598355 COL23A1Q86Y22 540 aaPredicted RBP21.47■■□□□ 1.03
TRIM28-213ENST00000598355 FLAD1Q8NFF5 587 aa21.47■■□□□ 1.03
TRIM28-213ENST00000598355 AK7Q96M32 723 aa21.47■■□□□ 1.03
TRIM28-213ENST00000598355 SSFA2P28290 1259 aa21.46■■□□□ 1.03
TRIM28-213ENST00000598355 RC3H1Q5TC82 1133 aaKnown RBP21.46■■□□□ 1.03
TRIM28-213ENST00000598355 RBM42Q9BTD8 480 aaKnown RBP21.46■■□□□ 1.03
TRIM28-213ENST00000598355 PTCD1O75127 700 aaKnown RBP21.45■■□□□ 1.02
TRIM28-213ENST00000598355 TEFQ10587 303 aa21.44■■□□□ 1.02
TRIM28-213ENST00000598355 SLC39A6Q13433 755 aa21.44■■□□□ 1.02
TRIM28-213ENST00000598355 PNNQ9H307 717 aaKnown RBP21.44■■□□□ 1.02
TRIM28-213ENST00000598355 ATF5Q9Y2D1 282 aaPredicted RBP21.44■■□□□ 1.02
TRIM28-213ENST00000598355 VSIG10Q8N0Z9 540 aa21.43■■□□□ 1.02
TRIM28-213ENST00000598355 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.42■■□□□ 1.02
TRIM28-213ENST00000598355 LAMB4A4D0S4 1761 aa21.42■■□□□ 1.02
TRIM28-213ENST00000598355 GNPATO15228 680 aa21.42■■□□□ 1.02
TRIM28-213ENST00000598355 NFE2L2Q16236 605 aa21.42■■□□□ 1.02
TRIM28-213ENST00000598355 ZNF790Q6PG37 636 aa21.41■■□□□ 1.02
TRIM28-213ENST00000598355 HEG1Q9ULI3 1381 aa21.4■■□□□ 1.02
TRIM28-213ENST00000598355 NEFMP07197 916 aa21.4■■□□□ 1.02
TRIM28-213ENST00000598355 MCM10Q7L590 875 aa21.4■■□□□ 1.02
TRIM28-213ENST00000598355 MAPK8IP3Q9UPT6 1336 aa21.39■■□□□ 1.01
TRIM28-213ENST00000598355 RPS6KA4O75676 772 aa21.39■■□□□ 1.01
TRIM28-213ENST00000598355 ADRA2BP18089 450 aa21.39■■□□□ 1.01
TRIM28-213ENST00000598355 CRKLP46109 303 aaKnown RBP21.39■■□□□ 1.01
TRIM28-213ENST00000598355 RTF1Q92541 710 aaKnown RBP21.39■■□□□ 1.01
TRIM28-213ENST00000598355 SMIM5Q71RC9 77 aa21.38■■□□□ 1.01
TRIM28-213ENST00000598355 DNAJC10Q8IXB1 793 aa21.38■■□□□ 1.01
TRIM28-213ENST00000598355 KIF13BQ9NQT8 1826 aa21.37■■□□□ 1.01
TRIM28-213ENST00000598355 PHF14O94880 888 aa21.37■■□□□ 1.01
TRIM28-213ENST00000598355 CYP19A1P11511 503 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-213ENST00000598355 DCTN1Q14203 1278 aa21.37■■□□□ 1.01
TRIM28-213ENST00000598355 INTS5Q6P9B9 1019 aaKnown RBP21.37■■□□□ 1.01
TRIM28-213ENST00000598355 TTC5Q8N0Z6 440 aa21.37■■□□□ 1.01
TRIM28-213ENST00000598355 ZNF496Q96IT1 587 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-213ENST00000598355 PPP1R1BQ9UD71 204 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-213ENST00000598355 RTCBQ9Y3I0 505 aaKnown RBP21.37■■□□□ 1.01
TRIM28-213ENST00000598355 SCN7AQ01118 1682 aa21.35■■□□□ 1.01
TRIM28-213ENST00000598355 BTBD11A6QL63 1104 aa21.35■■□□□ 1.01
TRIM28-213ENST00000598355 WDR43Q15061 677 aaKnown RBP eCLIP21.35■■□□□ 1.01
TRIM28-213ENST00000598355 ARXQ96QS3 562 aa21.35■■□□□ 1.01
TRIM28-213ENST00000598355 TMPOP42166 694 aaKnown RBP21.34■■□□□ 1.01
TRIM28-213ENST00000598355 CCDC87Q9NVE4 849 aa21.34■■□□□ 1.01
TRIM28-213ENST00000598355 ADAMTS8Q9UP79 889 aa21.34■■□□□ 1.01
TRIM28-213ENST00000598355 SOS1Q07889 1333 aaPredicted RBP21.33■■□□□ 1.01
TRIM28-213ENST00000598355 MSH5O43196 834 aa21.33■■□□□ 1.01
TRIM28-213ENST00000598355 KCNQ3O43525 872 aa21.33■■□□□ 1.01
TRIM28-213ENST00000598355 POLD1P28340 1107 aa21.33■■□□□ 1.01
TRIM28-213ENST00000598355 RUNDC1Q96C34 613 aa21.33■■□□□ 1.01
TRIM28-213ENST00000598355 FMNL2Q96PY5 1086 aa21.33■■□□□ 1.01
TRIM28-213ENST00000598355 BCORQ6W2J9 1755 aa21.33■■□□□ 1
TRIM28-213ENST00000598355 TAF7Q15545 349 aaPredicted RBP21.32■■□□□ 1
TRIM28-213ENST00000598355 ARHGEF1Q92888 912 aaKnown RBP21.32■■□□□ 1
TRIM28-213ENST00000598355 FHDC1Q9C0D6 1143 aaPredicted RBP21.32■■□□□ 1
TRIM28-213ENST00000598355 CCDC184Q52MB2 194 aa21.31■■□□□ 1
TRIM28-213ENST00000598355 TRAPPC3LQ5T215 181 aa21.31■■□□□ 1
TRIM28-213ENST00000598355 MSL1Q68DK7 614 aa21.31■■□□□ 1
TRIM28-213ENST00000598355 ZBTB1Q9Y2K1 713 aa21.31■■□□□ 1
TRIM28-213ENST00000598355 KIAA1551Q9HCM1 1747 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms