RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 COL5A3P25940 1745 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 TJP1Q07157 1748 aa18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 QSER1Q2KHR3 1735 aa18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 WDR43Q15061 677 aaKnown RBP eCLIP18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 CCDC146Q8IYE0 955 aa18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 IL17REQ8NFR9 667 aa18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 CCNL1Q9UK58 526 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-207ENST00000595631 ZNF831Q5JPB2 1677 aa18.31■□□□□ 0.52
SHKBP1-207ENST00000595631 SLC52A2Q9HAB3 445 aa18.31■□□□□ 0.52
SHKBP1-207ENST00000595631 ADAMTS8Q9UP79 889 aa18.31■□□□□ 0.52
SHKBP1-207ENST00000595631 C4BP0C0L5 1744 aa18.31■□□□□ 0.52
SHKBP1-207ENST00000595631 ZNF827Q17R98 1081 aa18.3■□□□□ 0.52
SHKBP1-207ENST00000595631 SLC27A3Q5K4L6 730 aa18.3■□□□□ 0.52
SHKBP1-207ENST00000595631 NBPF14Q5TI25 921 aa18.3■□□□□ 0.52
SHKBP1-207ENST00000595631 SMARCC1Q92922 1105 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-207ENST00000595631 MAPK8IP3Q9UPT6 1336 aa18.29■□□□□ 0.52
SHKBP1-207ENST00000595631 UBR3Q6ZT12 1888 aa18.29■□□□□ 0.52
SHKBP1-207ENST00000595631 DCTN1Q14203 1278 aa18.29■□□□□ 0.52
SHKBP1-207ENST00000595631 NEFMP07197 916 aa18.28■□□□□ 0.52
SHKBP1-207ENST00000595631 MCM10Q7L590 875 aa18.28■□□□□ 0.52
SHKBP1-207ENST00000595631 CEMIPQ8WUJ3 1361 aa18.28■□□□□ 0.52
SHKBP1-207ENST00000595631 KCPQ6ZWJ8 1503 aa18.28■□□□□ 0.52
SHKBP1-207ENST00000595631 LOC102724428A0A0B4J2F2 783 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 SIK1P57059 783 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 SLC39A6Q13433 755 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 NFE2L2Q16236 605 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 SLC4A9Q96Q91 983 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 MRS2Q9HD23 443 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 STK32BQ9NY57 414 aa18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 MYH14Q7Z406 1995 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-207ENST00000595631 CICQ96RK0 1608 aaPredicted RBP18.27■□□□□ 0.51
SHKBP1-207ENST00000595631 ITPK1Q13572 414 aa18.26■□□□□ 0.51
SHKBP1-207ENST00000595631 SLC15A2Q16348 729 aa18.26■□□□□ 0.51
SHKBP1-207ENST00000595631 RBM42Q9BTD8 480 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-207ENST00000595631 PDGFDQ9GZP0 370 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-207ENST00000595631 PNNQ9H307 717 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-207ENST00000595631 KDM3BQ7LBC6 1761 aa18.26■□□□□ 0.51
SHKBP1-207ENST00000595631 TEFQ10587 303 aa18.25■□□□□ 0.51
SHKBP1-207ENST00000595631 AKT1S1Q96B36 256 aa18.25■□□□□ 0.51
SHKBP1-207ENST00000595631 RRP7AQ9Y3A4 280 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-207ENST00000595631 PTCD1O75127 700 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-207ENST00000595631 ATP6V1AP38606 617 aa18.24■□□□□ 0.51
SHKBP1-207ENST00000595631 LINC00116Q8NCU8 138 aa18.24■□□□□ 0.51
SHKBP1-207ENST00000595631 RTF1Q92541 710 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-207ENST00000595631 RUNDC1Q96C34 613 aa18.24■□□□□ 0.51
SHKBP1-207ENST00000595631 THUMPD2Q9BTF0 503 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-207ENST00000595631 TMPOP42166 694 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-207ENST00000595631 NEUROD2Q15784 382 aa18.22■□□□□ 0.51
SHKBP1-207ENST00000595631 PNISRQ8TF01 805 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-207ENST00000595631 LRP5O75197 1615 aa18.22■□□□□ 0.51
SHKBP1-207ENST00000595631 HTATSF1O43719 755 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-207ENST00000595631 RIPK4P57078 832 aa18.21■□□□□ 0.51
SHKBP1-207ENST00000595631 SENP3-EIF4A1A0A087X0R7 540 aa18.2■□□□□ 0.5
SHKBP1-207ENST00000595631 KCNQ3O43525 872 aa18.2■□□□□ 0.5
SHKBP1-207ENST00000595631 SMIM5Q71RC9 77 aa18.2■□□□□ 0.5
SHKBP1-207ENST00000595631 AMIGO3Q86WK7 504 aa18.2■□□□□ 0.5
SHKBP1-207ENST00000595631 C4AP0C0L4 1744 aa18.2■□□□□ 0.5
SHKBP1-207ENST00000595631 PNPLA7Q6ZV29 1317 aa18.2■□□□□ 0.5
SHKBP1-207ENST00000595631 TFCP2L1Q9NZI6 479 aa18.19■□□□□ 0.5
SHKBP1-207ENST00000595631 BTBD11A6QL63 1104 aa18.18■□□□□ 0.5
SHKBP1-207ENST00000595631 MIS18AQ9NYP9 233 aa18.18■□□□□ 0.5
SHKBP1-207ENST00000595631 APAF1O14727 1248 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 ZNF790Q6PG37 636 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 DNAJC10Q8IXB1 793 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 TTC5Q8N0Z6 440 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 ZNF496Q96IT1 587 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 AK7Q96M32 723 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 COL24A1Q17RW2 1714 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 LAMB4A4D0S4 1761 aa18.17■□□□□ 0.5
SHKBP1-207ENST00000595631 ZBTB7AO95365 584 aa18.16■□□□□ 0.5
SHKBP1-207ENST00000595631 TRIM35Q9UPQ4 493 aa18.16■□□□□ 0.5
SHKBP1-207ENST00000595631 PHF14O94880 888 aa18.15■□□□□ 0.5
SHKBP1-207ENST00000595631 TAF7Q15545 349 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-207ENST00000595631 DIEXFQ68CQ4 756 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-207ENST00000595631 COL23A1Q86Y22 540 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-207ENST00000595631 GNPATO15228 680 aa18.14■□□□□ 0.49
SHKBP1-207ENST00000595631 FAM9BQ8IZU0 186 aa18.14■□□□□ 0.49
SHKBP1-207ENST00000595631 HEG1Q9ULI3 1381 aa18.14■□□□□ 0.49
SHKBP1-207ENST00000595631 ATF5Q9Y2D1 282 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-207ENST00000595631 CNTNAP4Q9C0A0 1308 aa18.13■□□□□ 0.49
SHKBP1-207ENST00000595631 MSH5O43196 834 aa18.12■□□□□ 0.49
SHKBP1-207ENST00000595631 CRKLP46109 303 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-207ENST00000595631 LMOD3Q0VAK6 560 aa18.12■□□□□ 0.49
SHKBP1-207ENST00000595631 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-207ENST00000595631 PRAMEF22A3QJZ6 481 aa18.11■□□□□ 0.49
SHKBP1-207ENST00000595631 CYP19A1P11511 503 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-207ENST00000595631 FMNL2Q96PY5 1086 aa18.11■□□□□ 0.49
SHKBP1-207ENST00000595631 RC3H1Q5TC82 1133 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-207ENST00000595631 INTS5Q6P9B9 1019 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-207ENST00000595631 VSIG10Q8N0Z9 540 aa18.1■□□□□ 0.49
SHKBP1-207ENST00000595631 HMGB2P26583 209 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-207ENST00000595631 SPON1Q9HCB6 807 aa18.09■□□□□ 0.49
SHKBP1-207ENST00000595631 SSFA2P28290 1259 aa18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 MSL1Q68DK7 614 aa18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 MTFR1LQ9H019 292 aa18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 CCDC87Q9NVE4 849 aa18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 TSPYL4Q9UJ04 414 aa18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 ZBTB1Q9Y2K1 713 aa18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 RTCBQ9Y3I0 505 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-207ENST00000595631 RPS6KA4O75676 772 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms