RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 ABTB2Q8N961 1025 aa14.48□□□□□ -0.09
VRK3-208ENST00000594104 CDC45O75419 566 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 FRAT2O75474 233 aaPredicted RBP14.47□□□□□ -0.09
VRK3-208ENST00000594104 CEP85Q6P2H3 762 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 HSCBQ8IWL3 235 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 STK31Q9BXU1 1019 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 BCL11AQ9H165 835 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 CHMP5Q9NZZ3 219 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 ATP10DQ9P241 1426 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 KCNH5Q8NCM2 988 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 IP6K1Q92551 441 aa14.47□□□□□ -0.09
VRK3-208ENST00000594104 MAP3K5Q99683 1374 aa14.46□□□□□ -0.09
VRK3-208ENST00000594104 ZNF142P52746 1687 aaPredicted RBP14.46□□□□□ -0.09
VRK3-208ENST00000594104 SOX12O15370 315 aa14.46□□□□□ -0.09
VRK3-208ENST00000594104 TAF7Q15545 349 aaPredicted RBP14.46□□□□□ -0.09
VRK3-208ENST00000594104 PLEKHM2Q8IWE5 1019 aa14.46□□□□□ -0.09
VRK3-208ENST00000594104 LRRC37A3O60309 1634 aa14.46□□□□□ -0.09
VRK3-208ENST00000594104 CHD2O14647 1828 aaKnown RBP14.46□□□□□ -0.1
VRK3-208ENST00000594104 KRT24Q2M2I5 525 aa14.46□□□□□ -0.1
VRK3-208ENST00000594104 RGPD8O14715 1765 aaPredicted RBP14.46□□□□□ -0.1
VRK3-208ENST00000594104 NWD1Q149M9 1564 aa14.45□□□□□ -0.1
VRK3-208ENST00000594104 FOXO3O43524 673 aa14.45□□□□□ -0.1
VRK3-208ENST00000594104 ZMYND10O75800 440 aa14.45□□□□□ -0.1
VRK3-208ENST00000594104 CADPS2Q86UW7 1296 aa14.45□□□□□ -0.1
VRK3-208ENST00000594104 ADGRL3Q9HAR2 1447 aa14.45□□□□□ -0.1
VRK3-208ENST00000594104 GNAI3P08754 354 aa14.44□□□□□ -0.1
VRK3-208ENST00000594104 TBC1D9Q6ZT07 1266 aa14.44□□□□□ -0.1
VRK3-208ENST00000594104 TTC22Q5TAA0 569 aa14.44□□□□□ -0.1
VRK3-208ENST00000594104 MARF1Q9Y4F3 1742 aaKnown RBP14.43□□□□□ -0.1
VRK3-208ENST00000594104 HOXB7P09629 217 aa14.43□□□□□ -0.1
VRK3-208ENST00000594104 MSH6P52701 1360 aa14.43□□□□□ -0.1
VRK3-208ENST00000594104 NCOA3Q9Y6Q9 1424 aa14.42□□□□□ -0.1
VRK3-208ENST00000594104 GNAI2P04899 355 aa14.42□□□□□ -0.1
VRK3-208ENST00000594104 SLKQ9H2G2 1235 aaPredicted RBP14.42□□□□□ -0.1
VRK3-208ENST00000594104 CASC1Q6TDU7 716 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 IL17REQ8NFR9 667 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 MEIS3Q99687 375 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 OSBPL3Q9H4L5 887 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 RYDENQ9NUL5 291 aaKnown RBP14.41□□□□□ -0.1
VRK3-208ENST00000594104 PXDNLA1KZ92 1463 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 PHRF1Q9P1Y6 1649 aaKnown RBP14.41□□□□□ -0.1
VRK3-208ENST00000594104 IGSF3O75054 1194 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 MIS18AQ9NYP9 233 aa14.41□□□□□ -0.1
VRK3-208ENST00000594104 CEMIPQ8WUJ3 1361 aa14.4□□□□□ -0.1
VRK3-208ENST00000594104 NFAT5O94916 1531 aa14.4□□□□□ -0.1
VRK3-208ENST00000594104 PSME1Q06323 249 aa14.4□□□□□ -0.1
VRK3-208ENST00000594104 MKRN3Q13064 507 aaKnown RBP14.4□□□□□ -0.1
VRK3-208ENST00000594104 SEMA3EO15041 775 aa14.4□□□□□ -0.1
VRK3-208ENST00000594104 FLIIQ13045 1269 aa14.4□□□□□ -0.1
VRK3-208ENST00000594104 KCTD17Q8N5Z5 321 aa14.4□□□□□ -0.1
VRK3-208ENST00000594104 SETD1BQ9UPS6 1966 aaKnown RBP14.39□□□□□ -0.11
VRK3-208ENST00000594104 DDIT3P35638 169 aa14.39□□□□□ -0.11
VRK3-208ENST00000594104 G2E3Q7L622 706 aa14.39□□□□□ -0.11
VRK3-208ENST00000594104 NPHP4O75161 1426 aaPredicted RBP14.39□□□□□ -0.11
VRK3-208ENST00000594104 GSPT1P15170 499 aaKnown RBP14.39□□□□□ -0.11
VRK3-208ENST00000594104 AMOTQ4VCS5 1084 aa14.39□□□□□ -0.11
VRK3-208ENST00000594104 KIF2CQ99661 725 aa14.39□□□□□ -0.11
VRK3-208ENST00000594104 CACNA1FO60840 1977 aa14.38□□□□□ -0.11
VRK3-208ENST00000594104 ADAMTSL3P82987 1691 aa14.38□□□□□ -0.11
VRK3-208ENST00000594104 PTMSP20962 102 aa14.38□□□□□ -0.11
VRK3-208ENST00000594104 OVOS2A0A0G2JMS6 1433 aa14.38□□□□□ -0.11
VRK3-208ENST00000594104 ATP8B2P98198 1209 aa14.37□□□□□ -0.11
VRK3-208ENST00000594104 RABEP1Q15276 862 aa14.37□□□□□ -0.11
VRK3-208ENST00000594104 NUTM2GQ5VZR2 741 aa14.37□□□□□ -0.11
VRK3-208ENST00000594104 NCAPD2Q15021 1401 aa14.37□□□□□ -0.11
VRK3-208ENST00000594104 MCM4P33991 863 aa14.37□□□□□ -0.11
VRK3-208ENST00000594104 PLEKHO1Q53GL0 409 aaPredicted RBP14.37□□□□□ -0.11
VRK3-208ENST00000594104 MST1RQ04912 1400 aa14.37□□□□□ -0.11
VRK3-208ENST00000594104 FKBP5Q13451 457 aaPredicted RBP14.36□□□□□ -0.11
VRK3-208ENST00000594104 ESCO1Q5FWF5 840 aa14.36□□□□□ -0.11
VRK3-208ENST00000594104 SLC4A10Q6U841 1118 aa14.36□□□□□ -0.11
VRK3-208ENST00000594104 REC8O95072 547 aa14.36□□□□□ -0.11
VRK3-208ENST00000594104 HSP90AB1P08238 724 aaKnown RBP14.36□□□□□ -0.11
VRK3-208ENST00000594104 AKAP4Q5JQC9 854 aa14.36□□□□□ -0.11
VRK3-208ENST00000594104 SRCIN1Q9C0H9 1055 aa14.36□□□□□ -0.11
VRK3-208ENST00000594104 MED1Q15648 1581 aaPredicted RBP14.36□□□□□ -0.11
VRK3-208ENST00000594104 DDX11L8A8MPP1 907 aa14.35□□□□□ -0.11
VRK3-208ENST00000594104 PLEKHG5O94827 1062 aa14.35□□□□□ -0.11
VRK3-208ENST00000594104 LTV1Q96GA3 475 aaPredicted RBP14.35□□□□□ -0.11
VRK3-208ENST00000594104 LMTK3Q96Q04 1460 aa14.35□□□□□ -0.11
VRK3-208ENST00000594104 STK24Q9Y6E0 443 aa14.35□□□□□ -0.11
VRK3-208ENST00000594104 SLIT3O75094 1523 aa14.35□□□□□ -0.11
VRK3-208ENST00000594104 F6X3S4 739 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 K7ELQ4 463 aaPredicted RBP14.34□□□□□ -0.11
VRK3-208ENST00000594104 ARHGEF25Q86VW2 580 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 USP26Q9BXU7 913 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 AOX1Q06278 1338 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 SDSP20132 328 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 NBPF6Q5VWK0 638 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 C16orf71Q8IYS4 520 aaPredicted RBP14.34□□□□□ -0.11
VRK3-208ENST00000594104 NBPF4Q96M43 638 aa14.34□□□□□ -0.11
VRK3-208ENST00000594104 BCL11BQ9C0K0 894 aaPredicted RBP14.34□□□□□ -0.11
VRK3-208ENST00000594104 FAM208AQ9UK61 1670 aaKnown RBP14.34□□□□□ -0.11
VRK3-208ENST00000594104 TESPA1A2RU30 521 aaPredicted RBP14.33□□□□□ -0.11
VRK3-208ENST00000594104 EIF4A1P60842 406 aaKnown RBP14.33□□□□□ -0.11
VRK3-208ENST00000594104 HDGFL1Q5TGJ6 251 aa14.33□□□□□ -0.11
VRK3-208ENST00000594104 LRRCC1Q9C099 1032 aa14.33□□□□□ -0.11
VRK3-208ENST00000594104 STAP2Q9UGK3 403 aa14.33□□□□□ -0.11
VRK3-208ENST00000594104 HDAC5Q9UQL6 1122 aa14.33□□□□□ -0.11
VRK3-208ENST00000594104 N4BP2Q86UW6 1770 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms